{"id":"W2114200582","doi":"10.1093/nar/gkr827","title":"PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Fudan University","keywords":"Biology; Gene; Mutant; Genetics; Saccharomyces cerevisiae; Phenotype; Mutation; Database; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006167238,0.002548163,0.001404063,0.005437124,0.0005636109,0.001488859,0.00173822,0.001112148,0.007438269],"category_scores_gemma":[0.002314269,0.0008958077,0.001003385,0.006403906,0.0002707359,0.00126724,0.001509592,0.0007593645,0.004783587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006101627,"about_ca_system_score_gemma":0.001461011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004642115,"about_ca_topic_score_gemma":0.007012543,"domain_scores_codex":[0.9996158,0.00004081412,0.0001018066,0.00009351117,0.0001154526,0.00003261199],"domain_scores_gemma":[0.9989713,0.0002348193,0.0002551748,0.0002242683,0.0001666166,0.0001477716],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.006328306,0.0005916602,0.05557795,0.02137779,0.001537925,0.00859634,0.00135156,0.01850844,0.1423046,0.007425286,0.529277,0.2071232],"study_design_scores_gemma":[0.001146261,0.0003841749,0.1108098,0.001085946,0.001187908,0.004910602,0.0005533238,0.01934722,0.05774948,0.009441582,0.7929998,0.0003839202],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.03682185,0.002180159,0.009990437,0.0001356935,0.00006014813,0.0001538622,0.9189095,0.02872781,0.003020662],"genre_scores_gemma":[0.02887292,0.001569552,0.01292778,0.00007131961,0.00001114209,0.000227333,0.9544439,0.001278421,0.0005976855],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.007438269,"threshold_uncertainty_score":0.02488351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04218768238116957,"score_gpt":0.3115116405482529,"score_spread":0.2693239581670833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}