{"id":"W2114473966","doi":"10.1107/s0907444900014116","title":"<i>Fusarium oxysporum</i>trypsin at atomic resolution at 100 and 283 K: a study of ligand binding","year":2001,"lang":"en","type":"article","venue":"Acta Crystallographica Section D Biological Crystallography","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"","keywords":"Crystallography; Chemistry; Peptide; Binding site; Trypsin; Resolution (logic); Side chain; Ligand (biochemistry); Electron density; Active site; Protein structure; Stereochemistry; Enzyme; Biochemistry; Electron; Receptor; Physics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006219029,0.0005339374,0.0006158109,0.0005934063,0.0005945715,0.00005202738,0.0003395305,0.0006685688,0.00004014974],"category_scores_gemma":[0.00008633792,0.0004292466,0.0004455324,0.001212415,0.0006481424,0.00002643624,0.000705565,0.0002837449,4.752783e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005927172,"about_ca_system_score_gemma":0.00002116633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001498719,"about_ca_topic_score_gemma":0.0005931696,"domain_scores_codex":[0.9966291,0.0003781709,0.0007378641,0.001239421,0.0003543212,0.0006611522],"domain_scores_gemma":[0.9984123,0.0000617199,0.0004946142,0.0006018718,0.0001813886,0.0002480796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001158814,0.0006130166,0.29212,0.0000171896,0.0002683213,0.00001094125,0.0000508928,0.000007919887,0.705445,0.000008336831,0.000197014,0.0001025504],"study_design_scores_gemma":[0.007326932,0.01783602,0.7718123,0.00008338919,0.0004165044,0.0007255249,0.001942939,0.00006857933,0.05043544,0.0006789152,0.1463798,0.002293699],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970143,0.00101247,0.0001009717,0.0001430987,0.0001486582,0.000946574,0.00006636283,0.00008959413,0.0004779261],"genre_scores_gemma":[0.9962995,0.002582381,0.0001481526,0.0001409477,0.0001868674,0.0001205519,0.0003463684,0.00003757546,0.000137645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6550096,"threshold_uncertainty_score":0.9998159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01681908643462083,"score_gpt":0.237168208879832,"score_spread":0.2203491224452112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}