{"id":"W2114539129","doi":"10.3390/genes3020291","title":"The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence","year":2012,"lang":"en","type":"article","venue":"Genes","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Genome; Phylogenetic tree; Evolutionary biology; Gene; Phylogenetics; Computational biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006420501,0.0002843108,0.0006194356,0.002171705,0.0005504699,0.001178175,0.0003116032,0.000399623,0.001290175],"category_scores_gemma":[0.002498083,0.0001662086,0.0003603509,0.003425187,0.0005007221,0.001177503,0.001013155,0.0005808345,0.0002419236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005024255,"about_ca_system_score_gemma":0.0005711994,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003072111,"about_ca_topic_score_gemma":0.003700224,"domain_scores_codex":[0.9996372,0.00003945195,0.00002331371,0.0001476226,0.00007494385,0.00007741396],"domain_scores_gemma":[0.9989318,0.000346333,0.0001996862,0.0001510557,0.0002160445,0.0001551015],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002309906,0.00009885522,0.1574926,0.001778654,0.0003735863,0.0006453834,0.002471345,0.001916703,0.7549477,0.001935673,0.001278426,0.07475113],"study_design_scores_gemma":[0.00002764671,0.0002883588,0.9448483,0.0001421233,0.0003189417,0.001546128,0.001652374,0.005344062,0.02714456,0.002701064,0.01593574,0.00005057402],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874337,0.00317338,0.002652898,0.0001532699,0.00001235286,0.00001550191,0.005535607,0.00008570034,0.0009376074],"genre_scores_gemma":[0.9798038,0.00144189,0.004542271,0.00006947477,0.00001819966,0.00002124374,0.0137674,0.00005132274,0.0002843395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003072111,"threshold_uncertainty_score":0.006108463,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05029866666414211,"score_gpt":0.2914132047113258,"score_spread":0.2411145380471837,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}