{"id":"W2114625860","doi":"10.1093/molbev/msk001","title":"Homologs of Mitochondrial Transcription Factor B, Sparsely Distributed Within the Eukaryotic Radiation, Are Likely Derived from the Dimethyladenosine Methyltransferase of the Mitochondrial Endosymbiont","year":2006,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"National Institute of Allergy and Infectious Diseases; Genome Atlantic; Joint Genome Institute; Canadian Institutes of Health Research; Genome Canada; Canada Research Chairs; Canadian Institute for Advanced Research; U.S. Department of Energy","keywords":"Biology; Genetics; Mitochondrial DNA; Gene; Phylogenetic tree; Transcription factor; Intron; Transcription (linguistics); Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001197016,0.0001789577,0.0002093923,0.00002376783,0.0002461507,0.00001052429,0.0003222578,0.0002953171,0.000007137793],"category_scores_gemma":[0.0001375772,0.0001071806,0.0001853881,0.000144845,0.0005707677,0.000006952807,0.00006228419,0.0001686694,8.885619e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001861047,"about_ca_system_score_gemma":0.00006761491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009988375,"about_ca_topic_score_gemma":0.0003478634,"domain_scores_codex":[0.998471,0.0006129373,0.0003175086,0.0003045902,0.0001167633,0.0001771748],"domain_scores_gemma":[0.9992008,0.00006263411,0.0002409256,0.0003587459,0.000107067,0.00002977942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003556168,0.00006672958,0.05649218,0.000008196255,0.0001197352,7.855219e-7,0.00008955359,0.0001546174,0.9415572,0.0009267252,0.0001494079,0.0000791983],"study_design_scores_gemma":[0.0008960849,0.0001513489,0.3955991,0.00001146639,0.0001245815,0.000004784787,0.00004623354,0.00003032341,0.6001971,0.002704785,0.0001328127,0.0001014264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9243692,0.003571088,0.06914963,0.0008376561,0.0005845244,0.0004916426,0.0009838061,0.000006675744,0.000005773039],"genre_scores_gemma":[0.9986598,0.00005474874,0.0003423383,0.0001069749,0.000206611,0.00001835362,0.0005910406,0.000008837482,0.00001122541],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3413602,"threshold_uncertainty_score":0.4370698,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00922327677491791,"score_gpt":0.2079311333108509,"score_spread":0.198707856535933,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}