{"id":"W2114636300","doi":"10.1186/1471-2180-9-195","title":"malT knockout mutation invokes a stringent type gene-expression profile in Actinobacillus pleuropneumoniae in bronchoalveolar fluid","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences; Public Health Agency of Canada; Université de Montréal; University of Guelph","funders":"","keywords":"Actinobacillus pleuropneumoniae; Regulon; Biology; Microbiology; Gene; Mutant; Innate immune system; Wild type; Molecular biology; Genetics; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003962425,0.0002824492,0.0004062207,0.0005479679,0.0001378114,0.00002405143,0.0002665081,0.0004727443,0.0009826223],"category_scores_gemma":[0.0001982911,0.0002643154,0.0001061585,0.0004169375,0.0001370298,0.000124524,0.0001260606,0.0005168071,0.0009740298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000231388,"about_ca_system_score_gemma":0.0002548774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003351324,"about_ca_topic_score_gemma":0.0009165177,"domain_scores_codex":[0.9973102,0.000674816,0.0005521278,0.0006278887,0.00002272409,0.0008122834],"domain_scores_gemma":[0.9992236,0.0001253894,0.000123672,0.0003715651,0.0001009605,0.00005474663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004881481,0.0004250672,0.01100595,0.00002779687,0.00001599069,0.00003273164,0.0002607543,0.0001302614,0.9844525,0.00006840248,0.001030958,0.002061455],"study_design_scores_gemma":[0.002925196,0.0005975048,0.05141693,0.00009444807,0.00001510069,0.0003494073,0.0001662472,0.00001919357,0.9339553,0.00009144665,0.009961627,0.0004075931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952697,0.002949694,0.00008450638,0.00009839432,0.0004493515,0.0006497283,0.00008784667,0.00007676197,0.0003340733],"genre_scores_gemma":[0.9976723,0.00019876,0.0002820013,0.0001554165,0.0000425759,0.00003427687,0.0006834156,0.00002025025,0.0009110313],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05049717,"threshold_uncertainty_score":0.9999809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02139752455445533,"score_gpt":0.2777403120404678,"score_spread":0.2563427874860125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}