{"id":"W2114656820","doi":"10.1186/gb-2010-11-3-r29","title":"Genome-wide functional analysis of human 5' untranslated region introns","year":2010,"lang":"en","type":"article","venue":"Genome biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research; National Institutes of Health; National Institute of Neurological Disorders and Stroke; National Institute of Mental Health; Canadian Institute for Advanced Research; National Heart, Lung, and Blood Institute; W. M. Keck Foundation","keywords":"Intron; Untranslated region; Biology; Genetics; Gene; Human genome; Three prime untranslated region; Group II intron; Minor spliceosome; Genome; RNA splicing; Five prime untranslated region; Exon; Computational biology; Alternative splicing; Messenger RNA; RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001908096,0.0001159648,0.0002289675,0.0002405354,0.00009380969,0.000006801428,0.0002060487,0.0002323867,0.0002341841],"category_scores_gemma":[0.00005472682,0.0001046144,0.0001706165,0.000309419,0.0002075604,0.00000195024,0.00007024606,0.0001668622,0.000009599639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008167612,"about_ca_system_score_gemma":0.00005766209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007614381,"about_ca_topic_score_gemma":0.0004459828,"domain_scores_codex":[0.9990091,0.00006446031,0.0002335046,0.0003251008,0.00006449647,0.0003033031],"domain_scores_gemma":[0.9993126,0.00001873496,0.00008126806,0.0003778086,0.0001116445,0.00009796498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005938271,0.00003153614,0.05907048,0.000003871116,0.0005678875,0.000001581256,0.0000138559,0.00006262045,0.939609,0.0003029785,0.00003698502,0.0002398341],"study_design_scores_gemma":[0.0007798219,0.0007222501,0.8802326,0.000001333783,0.0002725552,0.00001147228,0.00003389499,0.0001034476,0.0807383,0.0002481136,0.03655113,0.0003050293],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957325,0.0002588052,0.003048757,0.0001521497,0.00007869933,0.00009936059,0.00003385238,0.000009570024,0.0005862923],"genre_scores_gemma":[0.997262,0.00006259618,0.0001244093,0.00009189677,0.0001712477,0.00001094969,0.001403281,0.0000111051,0.0008625188],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8588707,"threshold_uncertainty_score":0.426605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01566774221585735,"score_gpt":0.2714321972920294,"score_spread":0.2557644550761721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}