{"id":"W2114728169","doi":"10.1101/gr.111922.110","title":"A novel approach identifies new differentially methylated regions (DMRs) associated with imprinted genes","year":2011,"lang":"en","type":"article","venue":"Genome Research","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University; Institute for Clinical Evaluative Sciences; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Hospital for Sick Children; Public Health Ontario; University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Hospital for Sick Children; Ministério da Ciência, Tecnologia e Ensino Superior; GlaxoSmithKline; University of Toronto; Fundação para a Ciência e a Tecnologia; McGill University","keywords":"Biology; Differentially methylated regions; Genetics; Genomic imprinting; Gene; DNA methylation; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002256701,0.0004440924,0.0004661951,0.001129158,0.000255661,0.0003968836,0.0004141483,0.0004627389,0.001621302],"category_scores_gemma":[0.0003955518,0.0002452479,0.0003913429,0.0004278902,0.0002404988,0.0002519937,0.00050721,0.0006113657,0.0004910509],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003040782,"about_ca_system_score_gemma":0.0003219325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009130564,"about_ca_topic_score_gemma":0.00386127,"domain_scores_codex":[0.9997981,0.00001503905,0.000009270534,0.00009266366,0.00005506443,0.00002981936],"domain_scores_gemma":[0.999827,0.00004221825,0.00004471894,0.00002717467,0.00002083598,0.00003807537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001347597,0.00002810831,0.003479244,0.000111014,0.00004751756,0.0001858747,0.00003390523,0.0001346646,0.9764116,0.0002818462,0.0001569722,0.01899444],"study_design_scores_gemma":[0.0001394907,0.0006466356,0.07559025,0.00003600846,0.0002991649,0.008108959,0.0001080567,0.007742423,0.8802674,0.001017437,0.02598896,0.0000551892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8422804,0.006719786,0.139004,0.0007744557,0.0001222781,0.0003354933,0.004909221,0.0009016193,0.004952734],"genre_scores_gemma":[0.754882,0.003164584,0.2293485,0.0005905991,0.00006304098,0.0002077433,0.005676439,0.00008837743,0.005978727],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001621302,"threshold_uncertainty_score":0.005423784,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1143536081404546,"score_gpt":0.3109951719534356,"score_spread":0.196641563812981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}