{"id":"W2114728169","doi":"10.1101/gr.111922.110","title":"A novel approach identifies new differentially methylated regions (DMRs) associated with imprinted genes","year":2011,"lang":"en","type":"article","venue":"Genome Research","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University; Institute for Clinical Evaluative Sciences; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Hospital for Sick Children; Public Health Ontario; University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Hospital for Sick Children; Ministério da Ciência, Tecnologia e Ensino Superior; GlaxoSmithKline; University of Toronto; Fundação para a Ciência e a Tecnologia; McGill University","keywords":"Biology; Differentially methylated regions; Genetics; Genomic imprinting; Gene; DNA methylation; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007229287,0.0002198621,0.0002333479,0.0001975583,0.0002413588,0.00008086786,0.0005721046,0.0002214338,0.000127441],"category_scores_gemma":[0.0001681069,0.0001844094,0.0001077405,0.0004741049,0.0001981662,0.000005710599,0.0005141287,0.0002890331,0.00002874364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003189065,"about_ca_system_score_gemma":0.0002709568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009173676,"about_ca_topic_score_gemma":0.0001751614,"domain_scores_codex":[0.9976923,0.0001730667,0.0002759616,0.000642669,0.0004499047,0.0007661328],"domain_scores_gemma":[0.998559,0.00002283962,0.00009095762,0.0006560382,0.0004128576,0.0002583017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003876525,0.0002107174,0.00118836,0.00002224479,0.0003237228,0.000003408175,0.0004177962,0.000008864598,0.9961438,0.00008335944,0.0000997028,0.001459269],"study_design_scores_gemma":[0.004119056,0.002029484,0.4391141,0.00009690307,0.000147791,0.0002339502,0.002135262,0.0004668199,0.5429284,0.0008972249,0.006484663,0.001346372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.955884,0.0009893853,0.03740451,0.00006304957,0.00006329135,0.0004625267,0.00001330397,0.00003593951,0.005083956],"genre_scores_gemma":[0.9814687,0.0001937406,0.005234804,0.00001936308,0.0001321759,0.00004710232,0.0001633465,0.0000610262,0.01267969],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4532154,"threshold_uncertainty_score":0.7519999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1143536081404546,"score_gpt":0.3109951719534356,"score_spread":0.196641563812981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}