{"id":"W2114739367","doi":"10.1128/jb.185.6.2036-2041.2003","title":"Excision and Integration of Cassettes by an Integron Integrase of<i>Nitrosomonas europaea</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Biology; Integrase; Integron; Nitrosomonas europaea; Nitrosomonas; Genetics; Virology; Computational biology; Microbiology; Gene; Plasmid; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000333507,0.0001069862,0.0002688977,0.00005415633,0.00002354197,0.000004943309,0.00009701788,0.00008243397,0.000008184053],"category_scores_gemma":[0.0002178289,0.00008075887,0.00006089147,0.00003589435,0.0001331674,0.0000026591,0.00003338164,0.00009384584,1.806419e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005610208,"about_ca_system_score_gemma":0.00004609345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009504372,"about_ca_topic_score_gemma":0.00001026086,"domain_scores_codex":[0.9991413,0.0001684899,0.0004169326,0.0001174726,0.00005318237,0.0001026176],"domain_scores_gemma":[0.9991936,0.00003250708,0.0003782158,0.0001245036,0.0002172064,0.00005396137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001869987,0.00007229393,0.005557723,0.00000778048,0.00005455346,0.000001599888,0.00009057466,0.000004422514,0.9908667,0.0001013793,0.0002393523,0.0028166],"study_design_scores_gemma":[0.0006434349,0.004817526,0.02063698,0.00002484307,0.00004000127,0.000222124,0.0003549987,0.000008539264,0.9668057,0.0005411569,0.00579433,0.0001103783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966508,0.001728853,0.00118338,0.00004629261,0.0001597186,0.00004441096,0.00001347814,3.900425e-7,0.0001726697],"genre_scores_gemma":[0.9970223,0.001109172,0.001716285,0.00005576853,0.0000513946,8.10979e-7,0.000009298013,0.000009106775,0.00002584686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02406104,"threshold_uncertainty_score":0.3293251,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01076085180586282,"score_gpt":0.2438669623912923,"score_spread":0.2331061105854295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}