{"id":"W2114759809","doi":"10.1186/1745-6150-1-19","title":"Rooting the tree of life by transition analyses.","year":2006,"lang":"en","type":"article","venue":"Biology Direct","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":223,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Environment Research Council; Canadian Institute for Advanced Research","keywords":"Biology; Tree of life (biology); Flagellate; Phylogenetic tree; Phylogenetics; Clade; Flagellum; Evolutionary biology; Convergent evolution; Genetics; Botany; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001181709,0.0000691709,0.0001036529,0.00001476903,0.00006645008,0.000003140377,0.0001264953,0.0001094567,0.00001511609],"category_scores_gemma":[0.00002919729,0.00005053375,0.00008306641,0.00005658917,0.0001121127,0.000001022228,0.00002610015,0.0000366913,0.00000342432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003044642,"about_ca_system_score_gemma":0.00001976699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003591728,"about_ca_topic_score_gemma":0.000117694,"domain_scores_codex":[0.9995021,0.00009688304,0.0001096834,0.0001485419,0.00002965882,0.0001130871],"domain_scores_gemma":[0.9997425,0.00001680464,0.00005845084,0.0001372002,0.00002648176,0.00001853935],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004550087,0.00003677798,0.03790788,0.000004739723,0.00005739379,2.588316e-7,0.00001251968,0.00003298383,0.9534244,0.00007722403,0.007547377,0.0008529681],"study_design_scores_gemma":[0.0005202199,0.0002278511,0.06945054,0.000004270922,0.00005872016,0.000002678267,0.00003640167,0.00004603527,0.905322,0.0002351219,0.02392657,0.000169639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891574,0.002727522,0.001058942,0.0002161098,0.00005988816,0.0000853407,0.0001061611,0.000008417109,0.006580255],"genre_scores_gemma":[0.9991065,0.00004041656,0.00006548855,0.0002010019,0.0001145946,0.000003920973,0.0003017478,0.000003873422,0.0001624617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04810243,"threshold_uncertainty_score":0.2060707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01408391810783269,"score_gpt":0.2516208757559944,"score_spread":0.2375369576481617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}