{"id":"W2114801075","doi":"10.1534/g3.114.014381","title":"A <i>Shigella flexneri</i> Virulence Plasmid Encoded Factor Controls Production of Outer Membrane Vesicles","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Shigella flexneri; Plasmid; Biology; Virulence; Bacterial outer membrane; Operon; Shigella; Microbiology; Mutant; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000918454,0.0004212883,0.0001598217,0.0002697936,0.00009645395,0.000352802,0.0001399898,0.0001384548,0.0007292434],"category_scores_gemma":[0.0001957326,0.0001386881,0.0001611426,0.0001569913,0.0002190326,0.0001605373,0.0001819765,0.0002221139,0.0003427046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003862393,"about_ca_system_score_gemma":0.0001708498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001191706,"about_ca_topic_score_gemma":0.0008274234,"domain_scores_codex":[0.9998751,0.00001807933,0.00001166337,0.00003061667,0.00003027871,0.00003421359],"domain_scores_gemma":[0.9998139,0.00004356439,0.00007024826,0.00001972078,0.00001855081,0.00003415009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004994478,0.000007602248,0.0004378187,0.000006887914,0.000001076818,0.00001308973,0.000003720141,0.00003179764,0.9991649,0.00001975551,0.000008395643,0.0002550722],"study_design_scores_gemma":[0.000005572759,0.00007576781,0.01108087,0.000002752157,0.000005949996,0.0001431406,0.00002242038,0.0005943835,0.9877068,0.00003368457,0.0003254644,0.000003148522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984458,0.0002027192,0.0006298427,0.00002588698,0.000003576904,0.00000423674,0.0001893153,0.00006204701,0.0004366377],"genre_scores_gemma":[0.9985019,0.0001393116,0.0005918159,0.00001183546,0.000002093104,0.000004977747,0.0003180051,0.00001987299,0.0004100988],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001191706,"threshold_uncertainty_score":0.002802372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01504603684486154,"score_gpt":0.2571945850240622,"score_spread":0.2421485481792006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}