{"id":"W2114801075","doi":"10.1534/g3.114.014381","title":"A <i>Shigella flexneri</i> Virulence Plasmid Encoded Factor Controls Production of Outer Membrane Vesicles","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Shigella flexneri; Plasmid; Biology; Virulence; Bacterial outer membrane; Operon; Shigella; Microbiology; Mutant; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002912408,0.0003122137,0.0003792227,0.00007484807,0.0001261248,0.00003075999,0.0004398492,0.0001723766,0.00001963846],"category_scores_gemma":[0.00007018835,0.0002899171,0.0001466361,0.0001651572,0.0003065334,0.000006100075,0.0003149148,0.0001106994,0.00001997425],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002039028,"about_ca_system_score_gemma":0.0001153609,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008159641,"about_ca_topic_score_gemma":0.00004166891,"domain_scores_codex":[0.9978888,0.0001850894,0.0004288961,0.0006211273,0.0003748797,0.0005011978],"domain_scores_gemma":[0.998544,0.00004330546,0.0002031938,0.000756717,0.0003125404,0.0001402536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001141537,0.0000629569,0.00404703,0.00009712283,0.0001283564,8.797991e-7,0.0001305541,0.0007370269,0.862192,0.00001818912,0.0002438362,0.1322279],"study_design_scores_gemma":[0.0004758423,0.0004130283,0.0008471537,0.00001260237,0.00002835246,0.000006792821,0.00005558831,0.0002954109,0.774581,0.0000435432,0.2229725,0.0002681389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8798961,0.1171032,0.001071678,0.0002537329,0.0004313455,0.0005205686,0.00005263931,0.00002882936,0.0006419604],"genre_scores_gemma":[0.9144229,0.07961158,0.003863008,0.0002008292,0.0008207751,0.00007335686,0.00004224413,0.00005326158,0.0009120544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2227287,"threshold_uncertainty_score":0.9999553,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01504603684486154,"score_gpt":0.2571945850240622,"score_spread":0.2421485481792006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}