{"id":"W2115174145","doi":"10.1128/jcm.00365-07","title":"High-Resolution Genetic Fingerprinting of European Strains of <i>Anaplasma phagocytophilum</i> by Use of Multilocus Variable-Number Tandem-Repeat Analysis","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Biology; Anaplasma phagocytophilum; Genetics; Variable number tandem repeat; Tandem repeat; Multilocus sequence typing; Typing; Multiple Loci VNTR Analysis; Anaplasma; Allele; Molecular epidemiology; Genotype; Tick; Genome; Gene; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003001611,0.000267411,0.00174926,0.0003612245,0.00005933714,0.000006194253,0.0004284156,0.0005226748,0.0004712782],"category_scores_gemma":[0.002130197,0.0002296831,0.000951121,0.0005214859,0.0009051576,0.000100934,0.0001561299,0.0006873314,0.00001994719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004678848,"about_ca_system_score_gemma":0.0001732239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002721577,"about_ca_topic_score_gemma":0.00009469591,"domain_scores_codex":[0.9935996,0.001490888,0.004060287,0.0003489074,0.00005555457,0.0004447877],"domain_scores_gemma":[0.9921414,0.002431317,0.004141637,0.0004182036,0.0007829588,0.00008450852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006600177,0.001038371,0.2571889,0.00003214474,0.003622558,0.00001827149,0.00004572667,0.001012275,0.731541,0.00006916573,0.001022575,0.003748967],"study_design_scores_gemma":[0.01008495,0.003432631,0.6976079,0.0002582118,0.006084021,0.001409548,0.0001036661,0.00003552101,0.2695832,0.0001173202,0.01065201,0.0006310241],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887789,0.0009782828,0.008773531,0.00003228323,0.0008979766,0.0001294437,0.0002731933,0.00001458965,0.0001218072],"genre_scores_gemma":[0.9955432,0.00022459,0.003817704,0.00009312405,0.0001200898,4.429121e-7,0.00006587889,0.0000259126,0.0001090529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4619578,"threshold_uncertainty_score":0.9366204,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02746040949328242,"score_gpt":0.3050934854064325,"score_spread":0.2776330759131501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}