{"id":"W2115430491","doi":"10.1111/j.1550-7408.2010.00505.x","title":"Evidence for Cryptic Speciation in <i>Carchesium polypinum</i> Linnaeus, 1758 (Ciliophora: Peritrichia) Inferred from Mitochondrial, Nuclear, and Morphological Markers","year":2010,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Biology; Nuclear gene; Evolutionary biology; Genetic diversity; Protist; Clade; Species complex; Ciliate; Mitochondrial DNA; Phylogenetics; Ribosomal RNA; Morphology (biology); Phylogenetic tree; Zoology; Genetics; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003783481,0.0001600606,0.0003172442,0.0001101899,0.0000683204,0.00002877203,0.0003146053,0.0003976292,0.00007496198],"category_scores_gemma":[0.0009075486,0.0001463058,0.0001380347,0.00008419612,0.0001997135,0.00001508154,0.0001451892,0.0003830177,0.000006004574],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002567311,"about_ca_system_score_gemma":0.0001226347,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003969187,"about_ca_topic_score_gemma":0.00007620789,"domain_scores_codex":[0.9988437,0.0001510197,0.000409974,0.0002892469,0.00005303347,0.000253074],"domain_scores_gemma":[0.999108,0.0001818643,0.0002836392,0.0001867128,0.0001394864,0.0001003444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001425397,0.00007843542,0.04823297,0.00001477552,0.00005260205,0.0000291118,0.00006026464,0.000006118718,0.9472815,0.00002790562,0.002414739,0.0003761612],"study_design_scores_gemma":[0.008859213,0.005477015,0.8189816,0.000199603,0.0003058133,0.001900756,0.0002939906,0.0001253697,0.1372726,0.0019852,0.02356349,0.001035303],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964142,0.001377965,0.0003307826,0.0006230526,0.0008947504,0.0002529489,0.00007320887,0.000003192402,0.00002984109],"genre_scores_gemma":[0.988708,0.000532533,0.0095186,0.0004838907,0.0006455103,0.000002858654,0.00005259856,0.00001243736,0.00004360681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8100089,"threshold_uncertainty_score":0.5966176,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02559120311036592,"score_gpt":0.2569242844168071,"score_spread":0.2313330813064412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}