{"id":"W2115430491","doi":"10.1111/j.1550-7408.2010.00505.x","title":"Evidence for Cryptic Speciation in <i>Carchesium polypinum</i> Linnaeus, 1758 (Ciliophora: Peritrichia) Inferred from Mitochondrial, Nuclear, and Morphological Markers","year":2010,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Biology; Nuclear gene; Evolutionary biology; Genetic diversity; Protist; Clade; Species complex; Ciliate; Mitochondrial DNA; Phylogenetics; Ribosomal RNA; Morphology (biology); Phylogenetic tree; Zoology; Genetics; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002344548,0.0002151783,0.0002442198,0.000986792,0.0009778459,0.0004250837,0.0003168299,0.0005343237,0.0008966945],"category_scores_gemma":[0.0004581303,0.0001694274,0.0001345576,0.0004698318,0.0007973216,0.0004743157,0.0005314967,0.0003396976,0.0001879687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006459118,"about_ca_system_score_gemma":0.0003664788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003528455,"about_ca_topic_score_gemma":0.006544183,"domain_scores_codex":[0.9998604,0.00001820101,0.00001202575,0.00006127103,0.00002460834,0.00002351851],"domain_scores_gemma":[0.9996202,0.0001106754,0.0001171311,0.00003014128,0.00005625228,0.0000655585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006986942,0.00004981996,0.3218039,0.0003244373,0.0001093505,0.0008550594,0.002146689,0.0004343333,0.6393247,0.001609421,0.0002093967,0.0324342],"study_design_scores_gemma":[0.00001721784,0.0001399427,0.986788,0.00002790315,0.00004112932,0.0007494943,0.0007424594,0.000764971,0.008004146,0.0005167835,0.00218841,0.00001934429],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997955,0.0005751515,0.0003371893,0.00004819759,0.000006307159,0.000006142521,0.00007903812,0.0000134555,0.0009795419],"genre_scores_gemma":[0.9991387,0.0001167375,0.0004802235,0.00003836712,0.000005414375,0.000004230737,0.000102965,0.000002056461,0.0001114018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003528455,"threshold_uncertainty_score":0.007015824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02559120311036592,"score_gpt":0.2569242844168071,"score_spread":0.2313330813064412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}