{"id":"W2115436861","doi":"10.1002/pros.23052","title":"DNA methylation screening of primary prostate tumors identifies SRD5A2 and CYP11A1 as candidate markers for assessing risk of biochemical recurrence","year":2015,"lang":"en","type":"article","venue":"The Prostate","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health; Mitacs; CancerCare Manitoba Foundation","keywords":"DNA methylation; Methylation; CpG site; Biology; Epigenetics; Prostate cancer; Differentially methylated regions; breakpoint cluster region; Cancer research; Cancer; Oncology; Genetics; Internal medicine; Gene; Medicine; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002438133,0.0002204529,0.0002730591,0.0004678002,0.0001333591,0.0001735688,0.0001396592,0.0001709984,0.001267371],"category_scores_gemma":[0.00048665,0.00007890617,0.0002249502,0.0003306816,0.0001149204,0.00005168247,0.0001433198,0.000216196,0.0002041586],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002489475,"about_ca_system_score_gemma":0.0001846546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001779385,"about_ca_topic_score_gemma":0.002231876,"domain_scores_codex":[0.9998822,0.00002125383,0.000006470235,0.00003337312,0.00003525848,0.00002142052],"domain_scores_gemma":[0.9997723,0.00005163021,0.00007968316,0.0000131794,0.00003353669,0.00004972659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008539921,0.00005854439,0.9104239,0.00006971958,0.0001319394,0.0001427962,0.00005273341,0.0005171972,0.06691547,0.00003533709,0.0002415441,0.02055674],"study_design_scores_gemma":[0.00001684492,0.0003845991,0.9745909,0.000005880135,0.0001116183,0.0007607045,0.00003633696,0.002492437,0.02101352,0.00005458977,0.0005276285,0.000004925408],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975089,0.0006547951,0.001039335,0.00003833523,0.000003307505,0.00001490459,0.0004102324,0.00002812223,0.0003019815],"genre_scores_gemma":[0.9988599,0.00009561492,0.0005885361,0.000008250146,0.000002572088,0.000005934842,0.0002745213,0.000001540091,0.0001631282],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001779385,"threshold_uncertainty_score":0.004239798,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02020699656308104,"score_gpt":0.2885944416612428,"score_spread":0.2683874450981618,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}