{"id":"W2115447066","doi":"10.1093/nar/gkt1104","title":"Prospective identification of parasitic sequences in phage display screens","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"Institut National de la Recherche Agronomique","keywords":"Biology; Phage display; Selection (genetic algorithm); Genomic library; Genetics; Computational biology; Population; Function (biology); DNA sequencing; Negative selection; Identification (biology); Ion semiconductor sequencing; Genome; DNA; Gene; Base sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009561891,0.0005799035,0.0005500018,0.0007430589,0.0002665221,0.0007948849,0.0003712656,0.0005242694,0.0009412174],"category_scores_gemma":[0.001519327,0.0003052814,0.0002770746,0.0006622846,0.0002445049,0.0003414662,0.000829358,0.0004626962,0.0008712025],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002277502,"about_ca_system_score_gemma":0.0003154835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002702567,"about_ca_topic_score_gemma":0.0008460452,"domain_scores_codex":[0.9990436,0.0002111154,0.00006370797,0.0001449762,0.0004060591,0.0001304611],"domain_scores_gemma":[0.9993556,0.0002645304,0.00008754771,0.00006358368,0.0001584725,0.00007029084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007511316,0.00003115122,0.002087897,0.0001018241,0.00001078703,0.0001145862,0.00004478731,0.0002318216,0.9904751,0.0001724593,0.00008491272,0.006569662],"study_design_scores_gemma":[0.00001250529,0.0003951509,0.008752045,0.00003160726,0.00006403746,0.0008921429,0.00008971285,0.005144309,0.9784721,0.0002293913,0.005898862,0.00001814386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9258504,0.001966036,0.06648891,0.0001302504,0.00003589358,0.0003244458,0.001303662,0.0005520483,0.003348387],"genre_scores_gemma":[0.9255114,0.002593791,0.06319837,0.0002719344,0.00002102979,0.0002991818,0.003495607,0.0001519491,0.004456716],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009561891,"threshold_uncertainty_score":0.005056918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05408427368687006,"score_gpt":0.3953533811962659,"score_spread":0.3412691075093958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}