{"id":"W2115527312","doi":"10.1128/jvi.01720-06","title":"Proteasome-Independent Major Histocompatibility Complex Class I Cross-Presentation Mediated by Papaya Mosaic Virus-Like Particles Leads to Expansion of Specific Human T Cells","year":2006,"lang":"en","type":"article","venue":"Journal of Virology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal; Hôpital Notre-Dame; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Fondation du CHUM","keywords":"Biology; Epitope; MHC class I; Antigen presentation; Cytotoxic T cell; Major histocompatibility complex; Antigen; Virology; Cross-presentation; Human leukocyte antigen; Antigen-presenting cell; CD8; Immune system; MHC restriction; Antigen processing; T cell; Immunology; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004315007,0.0001699705,0.0003482467,0.00008607179,0.00008468035,0.0000266019,0.000270877,0.0001684576,0.00005472291],"category_scores_gemma":[0.00002681777,0.0001445404,0.00014042,0.00009206234,0.000109006,0.00001978229,0.0001013951,0.0001561103,0.000008561072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004312792,"about_ca_system_score_gemma":0.00004511729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007267771,"about_ca_topic_score_gemma":0.00004780867,"domain_scores_codex":[0.9982021,0.0001267905,0.0009875402,0.0001866096,0.0002471507,0.0002497766],"domain_scores_gemma":[0.9987085,0.0000218646,0.0006872007,0.0002735699,0.0002192448,0.00008956178],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004197328,0.0002683187,0.01203879,0.0000287966,0.00003307532,0.000002033587,0.00006868387,0.0008269529,0.969686,0.00001499595,0.01638591,0.0002267099],"study_design_scores_gemma":[0.001816209,0.001432054,0.06834673,0.000009604418,0.00002516852,0.00002682703,0.00008286104,0.0003015778,0.9162369,0.0001455969,0.01141024,0.0001662477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973178,0.0003528521,0.001529927,0.0001635394,0.0001367323,0.0003616749,0.00005558437,0.000004421767,0.00007745026],"genre_scores_gemma":[0.998388,0.00003415423,0.001054629,0.000114843,0.0001238225,0.00001217119,0.0001849248,0.00001706347,0.00007041723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05630794,"threshold_uncertainty_score":0.5894186,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01910212013293135,"score_gpt":0.275244078050318,"score_spread":0.2561419579173866,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}