{"id":"W2115576371","doi":"10.1534/genetics.105.049312","title":"Recombination in Thermotoga: Implications for Species Concepts and Biogeography","year":2005,"lang":"en","type":"article","venue":"Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Thermotoga maritima; Biogeography; Recombination; Evolutionary biology; Genetics; Human genetics; Ecology; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006728913,0.00007938626,0.0000726002,0.00003888435,0.00005637397,0.00001234452,0.00007008379,0.00005824775,0.000002258345],"category_scores_gemma":[0.00001440538,0.00008151231,0.00003488309,0.00005254878,0.00006167978,3.868654e-7,0.00004755947,0.00001956311,7.79169e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005211539,"about_ca_system_score_gemma":0.00001301971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002057755,"about_ca_topic_score_gemma":0.0001303169,"domain_scores_codex":[0.9995242,0.00001118459,0.0001203733,0.0001888747,0.00002291104,0.0001324259],"domain_scores_gemma":[0.9997316,0.00001250158,0.00003400331,0.0001432624,0.00005110259,0.00002750538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001494999,0.00005231596,0.1415795,0.000008492528,0.00003435717,3.797055e-8,0.0001428839,0.0001065392,0.81878,0.001343843,0.001040959,0.03689611],"study_design_scores_gemma":[0.0007111088,0.0001829038,0.7422126,0.000003115188,0.00001301631,0.000002623962,0.00008467367,0.00006324628,0.06055035,0.001930686,0.1940761,0.0001695128],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934259,0.004082902,0.0005301757,0.001006239,0.00004723443,0.0002627966,0.00005608823,0.000002110099,0.000586552],"genre_scores_gemma":[0.9917412,0.002451835,0.005279392,0.0001753969,0.0001306281,0.00006071514,0.00003515686,0.00001023504,0.0001154785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7582297,"threshold_uncertainty_score":0.3323976,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01779693544908763,"score_gpt":0.2751624585102899,"score_spread":0.2573655230612023,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}