{"id":"W2115753045","doi":"10.1093/infdis/jiv177","title":"Integrated Sentinel Surveillance Linking Genetic, Antigenic, and Epidemiologic Monitoring of Influenza Vaccine-Virus Relatedness and Effectiveness During the 2013–2014 Influenza Season","year":2015,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Manitoba Health; Provincial Laboratory of Public Health; University of Manitoba; Institut National de Santé Publique du Québec; University of British Columbia; Public Health Ontario; BC Centre for Disease Control","funders":"","keywords":"Virology; Hemagglutination assay; Virus; Biology; Antigenic drift; Vaccination; Influenza A virus; Lineage (genetic); Clade; Influenza vaccine; Influenza-like illness; Gene; Titer; Genetics; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002883873,0.0003069535,0.0008378194,0.0001926133,0.0003414725,0.00004732286,0.0002144811,0.0001139197,0.000004815908],"category_scores_gemma":[0.003772642,0.0001608992,0.0001447936,0.000385286,0.0003604885,0.0002076914,0.0002619221,0.0006822969,0.000003510765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001514494,"about_ca_system_score_gemma":0.0002044009,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003578162,"about_ca_topic_score_gemma":0.00001852307,"domain_scores_codex":[0.9967486,0.001357545,0.0007954352,0.0002045654,0.0004928361,0.0004010527],"domain_scores_gemma":[0.9954422,0.001983428,0.0007346147,0.0003490014,0.001194688,0.0002960413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002272253,0.00009908658,0.9864411,0.000395292,0.0005915046,0.00003780865,0.0005571545,0.001809488,0.007095708,0.000003992161,0.0001041937,0.000592466],"study_design_scores_gemma":[0.0037307,0.0003763738,0.9911461,0.0006985876,0.0003387003,0.0004635036,0.0004880314,0.0001757924,0.001979758,0.0002272066,0.0002169563,0.0001583319],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9365256,0.06260303,0.00004667219,0.00011552,0.0002075109,0.0004277724,0.00001294041,0.00003976718,0.00002120171],"genre_scores_gemma":[0.9861604,0.01334848,0.00003558381,0.0001202867,0.0002865844,0.00001093821,6.850737e-7,0.00003171122,0.000005305089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04963483,"threshold_uncertainty_score":0.656128,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0488050108065358,"score_gpt":0.3496108430226861,"score_spread":0.3008058322161503,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}