{"id":"W2115757920","doi":"10.3201/eid1509.090272","title":"Predicting Phenotype and Emerging Strains among<i>Chlamydia trachomatis</i>Infections","year":2009,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Eye Institute; National Institutes of Health; National Institute of Allergy and Infectious Diseases; European Commission; Wellcome Trust","keywords":"Chlamydia trachomatis; Trachoma; Lymphogranuloma venereum; Biology; Multilocus sequence typing; Genotype; Single-nucleotide polymorphism; Genetics; Virology; Chlamydia; Sexually transmitted disease; Gene; Medicine; Syphilis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000289506,0.0002345863,0.0001557564,0.0005057274,0.0002288939,0.0004774165,0.0001504058,0.0002471247,0.0004640538],"category_scores_gemma":[0.001388929,0.00008730338,0.0001289926,0.0003364711,0.0001743818,0.0001958743,0.0001560867,0.0002385772,0.0001679835],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001283384,"about_ca_system_score_gemma":0.000148615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002452511,"about_ca_topic_score_gemma":0.003163895,"domain_scores_codex":[0.999859,0.00003408918,0.00001388544,0.00003849325,0.00002018922,0.00003448144],"domain_scores_gemma":[0.9995732,0.0001308584,0.0001191235,0.00002600784,0.00007982525,0.0000710047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001483159,0.00004634265,0.9729977,0.00001743554,0.00001459797,0.0001237471,0.000163424,0.0003123746,0.01718623,0.00002947326,0.0001135678,0.008846849],"study_design_scores_gemma":[0.000006999164,0.0001985081,0.9905867,0.00001243984,0.00002783391,0.0008490079,0.0005777481,0.00191887,0.00536393,0.00007104278,0.0003822084,0.000004686548],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994912,0.00005103431,0.0002277678,0.000012231,0.000001295939,0.00000418681,0.00007284515,0.000004297435,0.0001350734],"genre_scores_gemma":[0.9987378,0.00004427511,0.0008913182,0.00001345949,0.000002801576,0.000002530926,0.0002433119,0.000002333449,0.00006217979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002452511,"threshold_uncertainty_score":0.004876435,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008483641417109413,"score_gpt":0.2708292758925342,"score_spread":0.2623456344754248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}