{"id":"W2115787055","doi":"10.1093/molbev/msh254","title":"Gene Transfers from Nanoarchaeota to an Ancestor of Diplomonads and Parabasalids","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"Canadian Institutes of Health Research; Vetenskapsrådet; Joint Genome Institute; London School of Hygiene and Tropical Medicine; Canadian Institute for Advanced Research","keywords":"Biology; Crenarchaeota; Phylogenetic tree; Lineage (genetic); Euryarchaeota; Evolutionary biology; Phylogenetics; Genetics; Horizontal gene transfer; Most recent common ancestor; Gene; Archaea; Tree of life (biology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001325756,0.0001990905,0.0001983054,0.0007046941,0.0005464749,0.000515041,0.0001516705,0.000252818,0.001941408],"category_scores_gemma":[0.0003285229,0.0001287266,0.000188921,0.0004531086,0.0002468181,0.0003234855,0.0005008237,0.0003721563,0.0005233161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003634561,"about_ca_system_score_gemma":0.0004013605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001657001,"about_ca_topic_score_gemma":0.00264325,"domain_scores_codex":[0.9999021,0.000008619245,0.000009690008,0.00004220592,0.00001659769,0.00002077849],"domain_scores_gemma":[0.9997146,0.00006085959,0.00008053519,0.00004174613,0.00004802641,0.0000541939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006459992,0.00004087597,0.1287125,0.0002037579,0.00005573863,0.0004840599,0.0008974201,0.0002423192,0.8482755,0.001337111,0.00009722324,0.01900754],"study_design_scores_gemma":[0.00004994855,0.0004082726,0.8686802,0.0000787504,0.00016312,0.002309993,0.0033994,0.001683743,0.1028816,0.001244824,0.01906283,0.00003738145],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971581,0.0002650573,0.001044502,0.00003860802,0.000007799476,0.00000749522,0.0002104392,0.00002089718,0.001247202],"genre_scores_gemma":[0.9961452,0.000309947,0.001504768,0.00005857531,0.000006140616,0.00001594798,0.0006939413,0.00001825061,0.001247277],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001941408,"threshold_uncertainty_score":0.006494701,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008057114652621475,"score_gpt":0.2547347480786245,"score_spread":0.246677633426003,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}