{"id":"W2115787055","doi":"10.1093/molbev/msh254","title":"Gene Transfers from Nanoarchaeota to an Ancestor of Diplomonads and Parabasalids","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"Canadian Institutes of Health Research; Vetenskapsrådet; Joint Genome Institute; London School of Hygiene and Tropical Medicine; Canadian Institute for Advanced Research","keywords":"Biology; Crenarchaeota; Phylogenetic tree; Lineage (genetic); Euryarchaeota; Evolutionary biology; Phylogenetics; Genetics; Horizontal gene transfer; Most recent common ancestor; Gene; Archaea; Tree of life (biology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007538685,0.0001182835,0.0001414403,0.00003431368,0.00006307145,0.000003438677,0.00007113806,0.0001304489,8.331834e-7],"category_scores_gemma":[0.00001469506,0.0001137005,0.00003145059,0.00004383302,0.0002153554,9.907571e-7,0.0000633523,0.00003483722,5.894273e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009269473,"about_ca_system_score_gemma":0.00003060339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003734429,"about_ca_topic_score_gemma":0.000128768,"domain_scores_codex":[0.9993085,0.00004532078,0.0001296929,0.000325467,0.0000345982,0.0001564176],"domain_scores_gemma":[0.9996844,0.000004094763,0.00002664063,0.0001653678,0.00003522436,0.00008425223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008238789,0.00002563358,0.01837124,0.000004243949,0.00005094364,0.000001178676,0.0001451923,0.0001021036,0.9784522,0.00127914,0.000002347339,0.001483392],"study_design_scores_gemma":[0.0009468466,0.001863346,0.1928291,0.000009988632,0.00004497803,0.00001187003,0.00009263572,0.00001508679,0.7905153,0.01289964,0.0005087323,0.0002624794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9712161,0.004378761,0.02392206,0.0001828325,0.00007246149,0.0001221686,0.00007334282,0.000002844447,0.00002941838],"genre_scores_gemma":[0.9949312,0.0003984518,0.004341956,0.0001827911,0.00004900917,0.0000141333,0.00006802272,0.000009789248,0.000004712103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1879369,"threshold_uncertainty_score":0.4636571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008057114652621475,"score_gpt":0.2547347480786245,"score_spread":0.246677633426003,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}