{"id":"W2115894398","doi":"10.1128/mbio.02445-14","title":"Systems-Based Analysis of the <i>Sarcocystis neurona</i> Genome Identifies Pathways That Contribute to a Heteroxenous Life Cycle","year":2015,"lang":"en","type":"article","venue":"mBio","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; National Institutes of Health; University of Toronto","keywords":"Sarcocystis; Biology; Neospora caninum; Coccidia; Eimeria; Rhoptry; Theileria; Apicomplexa; Neospora; Virology; Toxoplasma gondii; Cryptosporidium; Protozoa; Genome; Parasite hosting; Genetics; Microbiology; Gene; Malaria; Immunology; Plasmodium falciparum","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002414878,0.0005073584,0.0003240217,0.0003483906,0.0003884655,0.0005630436,0.0003064762,0.0003864268,0.001026327],"category_scores_gemma":[0.0002174119,0.0001236231,0.0006222919,0.0003518612,0.0003094457,0.0002714151,0.0003840209,0.0004341069,0.0002867923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008283704,"about_ca_system_score_gemma":0.0005323944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003684007,"about_ca_topic_score_gemma":0.00575077,"domain_scores_codex":[0.9999033,0.0000136337,0.000007054395,0.00004245291,0.00001986438,0.00001365412],"domain_scores_gemma":[0.9998798,0.00004255868,0.00003650026,0.000009855385,0.00001682504,0.00001444229],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003459115,0.00008294951,0.01173831,0.0008328822,0.0001552492,0.0001393868,0.0001029027,0.002847621,0.9680669,0.0006417747,0.0005465741,0.0144997],"study_design_scores_gemma":[0.0001153088,0.001682457,0.3448255,0.0003571334,0.001157231,0.001285862,0.0005499672,0.07511829,0.5118997,0.003928859,0.0589455,0.000134118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9544368,0.006893338,0.02225927,0.00054696,0.00009268342,0.000123874,0.01069774,0.001031994,0.003917413],"genre_scores_gemma":[0.9296384,0.003197717,0.04553886,0.0002588223,0.0000232636,0.00009827396,0.01934562,0.0001170133,0.001781958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003684007,"threshold_uncertainty_score":0.007325113,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0379196302537444,"score_gpt":0.2538688868222747,"score_spread":0.2159492565685303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}