{"id":"W2116027855","doi":"10.1094/phyto-97-5-0632","title":"Molecular Detection of <i>Phytophthora ramorum</i> by Real-Time Polymerase Chain Reaction Using TaqMan, SYBR Green, and Molecular Beacons","year":2007,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Natural Resources Canada; Agriculture and Agri-Food Canada; Canadian Forest Service","funders":"","keywords":"Phytophthora ramorum; Biology; TaqMan; Polymerase chain reaction; Phytophthora; Molecular beacon; Oomycete; Pathogen; Internal transcribed spacer; Virology; Genetics; Molecular biology; Gene; Botany; Phylogenetic tree; Oligonucleotide","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003981026,0.0001722197,0.000272961,0.00003369909,0.0001267391,0.00001081203,0.00009892241,0.0001757361,0.000008462588],"category_scores_gemma":[0.00002403284,0.00009131261,0.00008021273,0.0002678222,0.0001336683,0.00006817254,0.00004618567,0.0001228688,0.000003200612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002154599,"about_ca_system_score_gemma":0.000005119382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000345206,"about_ca_topic_score_gemma":0.0001272604,"domain_scores_codex":[0.9987372,0.0001265611,0.0002842726,0.0003658137,0.0001404004,0.0003457299],"domain_scores_gemma":[0.999489,0.00007530818,0.0001941108,0.00008410395,0.00005396311,0.0001035078],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007018718,0.00005421076,0.0006554252,0.000011664,0.000006856729,0.0001861671,0.000006547778,0.000001513671,0.9885177,0.0000545283,0.000007675988,0.01042752],"study_design_scores_gemma":[0.0001689743,0.000186848,0.04958049,0.00002285386,0.00003482023,0.0003499393,0.00004843513,0.0001151732,0.9484153,0.0001630752,0.0007003626,0.0002136747],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997508,0.001204262,0.0003377781,0.0001615003,0.00009276308,0.0001655001,0.00009699319,0.0000466772,0.0003865452],"genre_scores_gemma":[0.9993562,0.0001208411,0.000189865,0.0001569434,0.00006874865,0.000004436795,0.00004214224,0.000002857488,0.00005793941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04892506,"threshold_uncertainty_score":0.372362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007663486212322436,"score_gpt":0.2128053126159209,"score_spread":0.2051418264035985,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}