{"id":"W2116027855","doi":"10.1094/phyto-97-5-0632","title":"Molecular Detection of <i>Phytophthora ramorum</i> by Real-Time Polymerase Chain Reaction Using TaqMan, SYBR Green, and Molecular Beacons","year":2007,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Natural Resources Canada; Agriculture and Agri-Food Canada; Canadian Forest Service","funders":"","keywords":"Phytophthora ramorum; Biology; TaqMan; Polymerase chain reaction; Phytophthora; Molecular beacon; Oomycete; Pathogen; Internal transcribed spacer; Virology; Genetics; Molecular biology; Gene; Botany; Phylogenetic tree; Oligonucleotide","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00282667,0.001498935,0.001254863,0.0009969325,0.000374831,0.0008987568,0.001185557,0.0009092998,0.003084821],"category_scores_gemma":[0.002005256,0.0008423212,0.0009899084,0.0008041491,0.0006997989,0.0006453958,0.0004937403,0.001590651,0.00204364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005531128,"about_ca_system_score_gemma":0.0004467632,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003076504,"about_ca_topic_score_gemma":0.0005820653,"domain_scores_codex":[0.9966154,0.001039629,0.0003419048,0.001035984,0.0006533721,0.0003138492],"domain_scores_gemma":[0.9981527,0.0008040703,0.0003802748,0.0001735473,0.0004156082,0.00007381319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006737174,0.00004465542,0.0003412396,0.0001492455,0.00000830144,0.00002236248,0.000035962,0.0000887681,0.9971848,0.000134217,0.000127971,0.001794964],"study_design_scores_gemma":[0.00004586068,0.0006925255,0.002588595,0.00005267851,0.00004361691,0.0001628567,0.0000629871,0.002913416,0.9880784,0.0002097645,0.005125108,0.00002423293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4479918,0.0039484,0.5307623,0.0004774705,0.0006334075,0.002055593,0.005123017,0.003690879,0.005317127],"genre_scores_gemma":[0.3879521,0.002571124,0.5832461,0.0006965302,0.0002107487,0.005015766,0.01053557,0.000575403,0.009196703],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003084821,"threshold_uncertainty_score":0.01494908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007663486212322436,"score_gpt":0.2128053126159209,"score_spread":0.2051418264035985,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}