{"id":"W2116156881","doi":"10.1261/rna.1056108","title":"Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties","year":2008,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Calgary","funders":"Canadian Institutes of Health Research; Universitetet i Oslo; Fondation pour la Recherche Médicale","keywords":"Group II intron; Intron; Biology; Group I catalytic intron; ORFS; Minor spliceosome; Genetics; Genome; Open reading frame; Bacterial genome size; Ribozyme; Phylogenetic tree; Gene; RNA splicing; RNA; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009412634,0.0001206457,0.0001398157,0.00003617919,0.0001061283,0.00001381829,0.00008198056,0.0001165296,0.00002421424],"category_scores_gemma":[0.00003817088,0.000112615,0.00002238692,0.00003782393,0.0001038016,0.000004949738,0.000170299,0.000067128,0.000002016072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000573604,"about_ca_system_score_gemma":0.00003850392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001453237,"about_ca_topic_score_gemma":0.0001526797,"domain_scores_codex":[0.9993426,0.0000455767,0.0001235943,0.0002423323,0.00005736401,0.0001885865],"domain_scores_gemma":[0.9996862,0.000009295978,0.00003432678,0.0001659219,0.00001069713,0.00009353433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007449057,0.00002641693,0.001499941,0.00001181453,0.00001902152,0.000007851889,0.0004174286,4.726567e-7,0.9806051,0.001585074,0.0005179495,0.0152345],"study_design_scores_gemma":[0.001754099,0.001079721,0.03706875,0.00005970479,0.00003298658,0.0002505427,0.0003497846,0.00002674304,0.8692609,0.0100793,0.07934195,0.000695504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995655,0.001566722,0.001778394,0.0004469254,0.00007339977,0.0001186746,0.000006081123,0.000008246647,0.0003465558],"genre_scores_gemma":[0.9952949,0.001529391,0.001922135,0.0001236468,0.0001867527,0.00001433875,0.00001616826,0.00001454502,0.0008981189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1113441,"threshold_uncertainty_score":0.4592305,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01772748897762994,"score_gpt":0.215219202855821,"score_spread":0.197491713878191,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}