{"id":"W2116324490","doi":"10.1039/b910747a","title":"Effects of the biological backbone on DNA–protein stacking interactions","year":2009,"lang":"en","type":"article","venue":"Physical Chemistry Chemical Physics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Stacking; DNA; Chemistry; Computational biology; Crystallography; Nanotechnology; Stereochemistry; Biology; Materials science; Biochemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002695147,0.0002528808,0.0002574962,0.000004137877,0.00006069096,0.00001288247,0.0003848903,0.0001395559,0.000003950944],"category_scores_gemma":[0.0001506835,0.0001796465,0.0002989822,0.0001453286,0.0001842047,0.000005340399,0.0001445447,0.0003412459,0.000004118006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002879875,"about_ca_system_score_gemma":0.00003244909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001210975,"about_ca_topic_score_gemma":5.365987e-8,"domain_scores_codex":[0.998919,0.00002798961,0.0001864842,0.0003944678,0.0002030901,0.0002689557],"domain_scores_gemma":[0.9991896,0.00004597151,0.0001342504,0.0004763828,0.00006500003,0.0000887613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000897124,0.0003941878,0.00001125411,0.0000454118,0.00002876801,8.68752e-7,0.00001553474,0.00003468142,0.9966175,0.0006145388,0.000123974,0.002023594],"study_design_scores_gemma":[0.0003646874,0.00009714581,0.0001687909,0.00005360139,0.00001996005,0.000002273631,0.000004234565,0.0001111979,0.9881831,0.01040147,0.0003842482,0.0002092484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968942,0.00003137293,0.0005311804,0.0001461173,0.00003688501,0.0002003318,0.00001787056,0.00002251272,0.002119559],"genre_scores_gemma":[0.9984987,0.000003556487,0.0001501565,0.0002605264,0.0008841574,0.00001853923,0.00005767408,0.00001630745,0.0001103723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009786933,"threshold_uncertainty_score":0.7325773,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00604709845062407,"score_gpt":0.2375070644641168,"score_spread":0.2314599660134928,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}