{"id":"W2116412804","doi":"10.1139/z04-112","title":"Phylogenetic relationships and divergence times of the genus<i>Tokudaia</i>within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the Cyt<i>b</i>gene, RAG 1, and IRBP","year":2004,"lang":"en","type":"article","venue":"Canadian Journal of Zoology","topic":"Animal Ecology and Behavior Studies","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Phylogenetic tree; Cytochrome b; Phylogenetics; Genus; Zoology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004430053,0.0001072521,0.0001638588,0.00002692206,0.0008221383,0.00002026969,0.0004057481,0.00007764438,0.0002293341],"category_scores_gemma":[0.0002031077,0.00005826371,0.00004949826,0.0001294364,0.001725037,0.00009172683,0.0001238789,0.0003252676,0.00000850887],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007036802,"about_ca_system_score_gemma":0.0001381931,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01188252,"about_ca_topic_score_gemma":0.1987278,"domain_scores_codex":[0.9990405,0.0002098963,0.0002862079,0.000142704,0.0001120437,0.0002086522],"domain_scores_gemma":[0.9992227,0.0002212799,0.0002680729,0.0001486309,0.000021501,0.0001177977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000006903968,0.00000560707,0.9940127,0.000001088832,0.00002792534,0.00002752412,0.00244406,0.000913793,0.001996471,0.0002193461,0.0001140438,0.0002305171],"study_design_scores_gemma":[0.0001751661,0.00007668121,0.9939299,0.000014776,0.00009378901,0.0001627884,0.0009490323,0.00001106134,0.0008483896,0.00342861,0.0002406655,0.00006914041],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945861,0.001943487,0.0000203181,0.002725546,0.0002763417,0.0001050593,0.00001816159,0.000001731302,0.0003232469],"genre_scores_gemma":[0.9991428,0.0001994581,0.0002258602,0.0003320747,0.00003849712,0.000002335135,3.812992e-7,0.000005184233,0.00005340884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1868452,"threshold_uncertainty_score":0.9946975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01971526592802594,"score_gpt":0.2097555420645242,"score_spread":0.1900402761364982,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}