{"id":"W2116463796","doi":"10.1371/journal.pone.0140467","title":"Genome-Wide DNA Methylation Patterns of Bovine Blastocysts Developed In Vivo from Embryos Completed Different Stages of Development In Vitro","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Blastocyst; DNA methylation; Biology; Methylation; Molecular biology; Embryo; Transcriptome; Andrology; Zygote; Genetics; Cell biology; Gene; Embryogenesis; Gene expression; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022004,0.0001398519,0.0003198166,0.0001265258,0.00001033107,0.000005104308,0.0001242373,0.000106587,0.00001588901],"category_scores_gemma":[0.0001515696,0.0001398562,0.00002680944,0.00009981311,0.00002028821,0.000003927494,0.0001022272,0.00006223736,0.000001139968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005317213,"about_ca_system_score_gemma":0.0001048872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001148035,"about_ca_topic_score_gemma":0.0005894354,"domain_scores_codex":[0.9987009,0.0001089048,0.0005282619,0.0002428058,0.0002583681,0.0001607352],"domain_scores_gemma":[0.9993327,0.00003894685,0.0002015665,0.0002084612,0.0001546439,0.00006365384],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001898662,0.0004762905,0.1937072,0.00004502659,0.00006522657,7.841113e-7,0.0003134131,0.00004962159,0.8047982,9.842272e-7,6.716571e-7,0.0003527166],"study_design_scores_gemma":[0.0007710739,0.0001020429,0.324539,0.00004592058,0.00001111231,1.891588e-8,0.00003746207,0.00009752617,0.6742181,0.0000375619,0.00003986971,0.0001003116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967494,0.0004613629,0.002312824,0.00002299787,0.00001794755,0.0002928776,0.00007682241,0.000004033368,0.00006173173],"genre_scores_gemma":[0.9953485,0.00008240532,0.003949043,0.00001306874,0.00002489388,0.00002538384,0.0004839134,0.0000173185,0.0000554463],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1308318,"threshold_uncertainty_score":0.570317,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0475523647417932,"score_gpt":0.2475613162259409,"score_spread":0.2000089514841477,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}