{"id":"W2116506837","doi":"10.1093/nar/gkh410","title":"PlasMapper: a web server for drawing and auto-annotating plasmid maps","year":2004,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Scalable Vector Graphics; Plasmid; Web server; Cloning (programming); Open reading frame; Multiple cloning site; Vector graphics; Selectable marker; Computational biology; Web application; Genetics; Graphics; Vector (molecular biology); Gene; Computer science; The Internet; World Wide Web; Computer graphics (images); Programming language; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001440111,0.002335264,0.001556978,0.005712146,0.001375774,0.002863226,0.004782314,0.001571159,0.09403008],"category_scores_gemma":[0.003397352,0.002543146,0.0012951,0.004700301,0.000433531,0.002908307,0.003311669,0.002343636,0.1085487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008506066,"about_ca_system_score_gemma":0.001266779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003259807,"about_ca_topic_score_gemma":0.003873033,"domain_scores_codex":[0.9992527,0.0001057158,0.00007234541,0.0001554115,0.0003359028,0.00007788431],"domain_scores_gemma":[0.9984186,0.0004562854,0.0001347448,0.0004039617,0.0004044916,0.0001819637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006719094,0.000150733,0.001169958,0.001627233,0.0001176629,0.0006964838,0.0003607072,0.00273108,0.03835575,0.003120924,0.6853483,0.2656493],"study_design_scores_gemma":[0.0003429393,0.0001381652,0.007234853,0.0003472683,0.0001082375,0.002827484,0.0002829396,0.04843343,0.06743155,0.01971281,0.8528165,0.0003236913],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003392489,0.0005163734,0.3785095,0.0002187405,0.0001631454,0.0004177506,0.07177762,0.5321518,0.01285264],"genre_scores_gemma":[0.02121784,0.001405238,0.5515294,0.0003152443,0.0001171677,0.002162008,0.2967957,0.09547554,0.03098182],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.09403008,"threshold_uncertainty_score":0.314562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0352170652327327,"score_gpt":0.3155903646678268,"score_spread":0.2803732994350941,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}