{"id":"W2116595900","doi":"10.1093/molbev/msu037","title":"A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes","year":2014,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":302,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"FP7 People: Marie-Curie Actions; Centre National de la Recherche Scientifique; Institut National de la Santé et de la Recherche Médicale; Science Foundation Ireland; Wellcome Trust","keywords":"Biology; Population genomics; Genome; Genetics; Population; Genetic variation; Evolutionary biology; Human evolutionary genetics; Genome evolution; Genomics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005388033,0.0003077525,0.0004766306,0.00127019,0.000439493,0.001327134,0.0006892626,0.0004163272,0.0006287025],"category_scores_gemma":[0.001809701,0.000319368,0.0004129884,0.001236168,0.0005733392,0.001334618,0.0006328757,0.001320477,0.0003520101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003609776,"about_ca_system_score_gemma":0.0003173103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000780018,"about_ca_topic_score_gemma":0.001050878,"domain_scores_codex":[0.9997727,0.00005228848,0.00001845299,0.00008237924,0.00006058886,0.00001355554],"domain_scores_gemma":[0.9993632,0.0002688973,0.00007585589,0.0001528172,0.00008767055,0.00005153217],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003027204,0.00009640938,0.02081488,0.001712352,0.0002529898,0.0007938617,0.001293632,0.03138514,0.7231212,0.0737335,0.00161977,0.1448736],"study_design_scores_gemma":[0.00005884847,0.0004319903,0.1888929,0.0005661534,0.0004393756,0.004678675,0.001516082,0.1204982,0.1417593,0.35962,0.1812809,0.000257616],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3120977,0.01281244,0.6607127,0.001181574,0.0001033247,0.00008942671,0.004658435,0.0009772421,0.007367165],"genre_scores_gemma":[0.6493858,0.009866248,0.3303946,0.0006052545,0.0001423564,0.0001589931,0.007876106,0.0003502467,0.001220368],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001327134,"threshold_uncertainty_score":0.00284946,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007700264541411823,"score_gpt":0.2288703171677682,"score_spread":0.2211700526263564,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}