{"id":"W2116616982","doi":"10.1186/1756-8935-6-s1-p9","title":"Genome-wide mapping of chromatin marks from 1,000 cells to study epigenetic reprogramming in primordial germ cells","year":2013,"lang":"en","type":"article","venue":"Epigenetics & Chromatin","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Reprogramming; Chromatin; Epigenetics; Germline; DNA methylation; Genetics; Histone; Deep sequencing; Germ cell; Chromatin immunoprecipitation; Genome; Computational biology; DNA; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009090235,0.0004626016,0.00072692,0.0008183912,0.0004798326,0.0008362784,0.0005729049,0.0004943954,0.00213336],"category_scores_gemma":[0.000828134,0.0002819026,0.0004925719,0.0008573941,0.0002490375,0.00033834,0.0006889264,0.00107031,0.001018644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002943425,"about_ca_system_score_gemma":0.000305609,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008243419,"about_ca_topic_score_gemma":0.002814698,"domain_scores_codex":[0.9995747,0.00004399733,0.00003381567,0.0001507677,0.0001526683,0.00004401915],"domain_scores_gemma":[0.9995666,0.00015573,0.00004759775,0.00007987484,0.00007511179,0.00007513271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006030462,0.00003545434,0.002279053,0.000104129,0.00006029692,0.00002236401,0.00004921784,0.0004010381,0.9875732,0.000186756,0.0003343757,0.008893834],"study_design_scores_gemma":[0.00003998502,0.0003172276,0.1252927,0.00004058755,0.000185434,0.0003165502,0.00008597179,0.007473777,0.8393168,0.0009924577,0.02590364,0.0000347549],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6559699,0.005556159,0.3036951,0.0003612143,0.0001632376,0.0005161735,0.02517633,0.003099374,0.005462616],"genre_scores_gemma":[0.6138395,0.003841499,0.316972,0.0009809748,0.0001457725,0.00140601,0.05704734,0.0009519188,0.004814895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00213336,"threshold_uncertainty_score":0.007136822,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01390662525882944,"score_gpt":0.2112334606039203,"score_spread":0.1973268353450908,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}