{"id":"W2116663183","doi":"10.1128/ec.4.10.1629-1638.2005","title":"Comparative Gene Genealogies Indicate that Two Clonal Lineages of<i>Cryptococcus gattii</i>in British Columbia ResembleStrains from Other Geographical Areas","year":2005,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"British Columbia Centre for Disease Control; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Cryptococcus gattii; Biological dispersal; Population; Genetics; Strain (injury); Genotype; Gene; Molecular epidemiology; Evolutionary biology; Cryptococcus; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005671358,0.0001334762,0.0001034245,0.0007645816,0.0005642653,0.00047837,0.0001429201,0.0001359741,0.001375626],"category_scores_gemma":[0.0002557388,0.00008732262,0.00005665915,0.0008969394,0.000228231,0.0001000783,0.0001493527,0.0002010241,0.0001732379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001053562,"about_ca_system_score_gemma":0.0006986494,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2121005,"about_ca_topic_score_gemma":0.3688128,"domain_scores_codex":[0.9999158,0.000004927717,0.000005125344,0.00002472271,0.00001867911,0.00003069335],"domain_scores_gemma":[0.9998357,0.00002227758,0.00004893878,0.000007573453,0.00004287945,0.00004244707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004583118,0.00007126625,0.7070438,0.00008420986,0.00004650111,0.0005997979,0.001906708,0.000428424,0.2455336,0.0004011118,0.0004255374,0.04300074],"study_design_scores_gemma":[0.000005294359,0.00003173355,0.9961091,0.0000110872,0.00001181785,0.0003564173,0.0005321482,0.0002633654,0.001532916,0.0000437337,0.001097327,0.000005234925],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985253,0.0001259641,0.00008838583,0.00001260735,9.389216e-7,0.00000461235,0.0001493264,0.000003686232,0.001089111],"genre_scores_gemma":[0.9985924,0.0001470774,0.0002231319,0.0000150282,8.998509e-7,0.000003923964,0.0004721373,0.000002393274,0.0005428172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7878995,"threshold_uncertainty_score":0.4217319,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03639762826077904,"score_gpt":0.2890212449172417,"score_spread":0.2526236166564627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}