{"id":"W2116663183","doi":"10.1128/ec.4.10.1629-1638.2005","title":"Comparative Gene Genealogies Indicate that Two Clonal Lineages of<i>Cryptococcus gattii</i>in British Columbia ResembleStrains from Other Geographical Areas","year":2005,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"British Columbia Centre for Disease Control; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Cryptococcus gattii; Biological dispersal; Population; Genetics; Strain (injury); Genotype; Gene; Molecular epidemiology; Evolutionary biology; Cryptococcus; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001857021,0.0001779744,0.0006541932,0.0001209075,0.0001255921,0.0000670365,0.0001274397,0.000118625,0.0007409489],"category_scores_gemma":[0.00003154233,0.0002224433,0.0001871397,0.0003356721,0.0003651405,0.00007155076,0.00008746792,0.0003687776,0.00005165672],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005717563,"about_ca_system_score_gemma":0.0000826419,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.02613496,"about_ca_topic_score_gemma":0.08991548,"domain_scores_codex":[0.9983819,0.00009148394,0.0004451814,0.0004057529,0.0003073667,0.0003682822],"domain_scores_gemma":[0.9990957,0.0002493587,0.0001418313,0.0002877495,0.0000898946,0.0001354337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000490571,0.0007784552,0.9891495,0.00003704496,0.0001530766,0.00008453312,0.0004128963,0.000220768,0.00211697,0.000006955729,0.005870035,0.001120778],"study_design_scores_gemma":[0.002289275,0.0002332148,0.9896351,0.0001413268,0.000106775,0.00003164721,0.0003710455,0.0003604141,0.004954106,0.0001533736,0.001513114,0.0002105923],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890297,0.003044835,0.00009209121,0.0003189585,0.0001410424,0.0005083843,0.0002078189,0.00006632508,0.006590821],"genre_scores_gemma":[0.9941468,0.0005402283,0.003588024,0.0003205003,0.0003265044,0.0000501626,0.00007122575,0.00002490623,0.0009316191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06378053,"threshold_uncertainty_score":0.9803501,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03639762826077904,"score_gpt":0.2890212449172417,"score_spread":0.2526236166564627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}