{"id":"W2116814217","doi":"10.1093/treephys/24.10.1073","title":"Variation in transcript abundance during somatic embryogenesis in gymnosperms","year":2004,"lang":"en","type":"article","venue":"Tree Physiology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; North Carolina State University; University of Calgary; National Science Foundation","keywords":"Somatic embryogenesis; Biology; Embryogenesis; Embryo; Somatic cell; Gene; Gene expression; Genetics; Cell biology; DNA microarray; Embryonic stem cell; Gametophyte; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001386312,0.0002714854,0.0003234208,0.0007303583,0.0002312155,0.000370256,0.0001477618,0.000288002,0.0006266605],"category_scores_gemma":[0.0002709621,0.0001905192,0.0002563584,0.0004084306,0.000212932,0.0001694532,0.0001981067,0.0003182962,0.0003134081],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002387515,"about_ca_system_score_gemma":0.0001386129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001188799,"about_ca_topic_score_gemma":0.001858747,"domain_scores_codex":[0.999826,0.00001283744,0.00001104989,0.00008485509,0.00003709346,0.0000282235],"domain_scores_gemma":[0.9997721,0.00006180009,0.00005428615,0.00002080698,0.00004445033,0.00004660447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005459509,0.0000049801,0.00236317,0.00001941883,0.000008354531,0.00003762704,0.00006209694,0.00002144029,0.9966303,0.00002102002,0.0000141218,0.0007628824],"study_design_scores_gemma":[0.00001848349,0.0003855215,0.7973841,0.00001583662,0.00007527078,0.0006164465,0.0002194638,0.0007313108,0.1970472,0.0001593201,0.00332029,0.00002680404],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994954,0.0007565327,0.001326559,0.00002545393,0.00001385924,0.00001576032,0.00198316,0.00005235169,0.0008722508],"genre_scores_gemma":[0.9881126,0.0005418462,0.00230169,0.00007566633,0.00002008998,0.00006704842,0.006149682,0.00004359297,0.00268768],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001188799,"threshold_uncertainty_score":0.002363801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006853862627503166,"score_gpt":0.2135716442816342,"score_spread":0.206717781654131,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}