{"id":"W2116901163","doi":"10.1186/1471-2164-11-120","title":"High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak","year":2010,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":326,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Toronto Public Health; University of Manitoba; Public Health Agency of Canada","funders":"Canadian Food Inspection Agency","keywords":"Subtyping; Biology; Pulsed-field gel electrophoresis; Outbreak; Genome; Genetics; Whole genome sequencing; Listeria monocytogenes; Prophage; Context (archaeology); DNA microarray; DNA sequencing; Genotype; Virology; Gene; Bacteriophage; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000452343,0.0003999237,0.0003960168,0.0006571427,0.0004698394,0.0007576366,0.0003803255,0.0006400284,0.0002063577],"category_scores_gemma":[0.001209043,0.0002144884,0.0004191771,0.0008183651,0.0002614434,0.0001564053,0.0004841775,0.0006060252,0.0001419511],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008652329,"about_ca_system_score_gemma":0.0009424741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01688562,"about_ca_topic_score_gemma":0.02044898,"domain_scores_codex":[0.9994158,0.00005063536,0.00003781463,0.0001399832,0.0002616188,0.00009419887],"domain_scores_gemma":[0.9990517,0.0002077854,0.0001753308,0.00006134292,0.0003971988,0.0001065647],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001575258,0.0006595219,0.2239281,0.000370134,0.0002362903,0.003554153,0.002846962,0.00367155,0.7374117,0.0001218809,0.001368497,0.02425599],"study_design_scores_gemma":[0.0001006749,0.0008462704,0.9169406,0.00004557732,0.0002860613,0.004102431,0.001730782,0.008204138,0.06358822,0.0001229311,0.003990523,0.00004185475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971679,0.0001069917,0.001206308,0.00007367373,0.00000615889,0.00006104755,0.001109613,0.00002776105,0.0002405179],"genre_scores_gemma":[0.9865639,0.0001477963,0.00698252,0.0001723937,0.000008887113,0.00006728024,0.005658124,0.0000267707,0.0003722322],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01688562,"threshold_uncertainty_score":0.0335747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07619533072548278,"score_gpt":0.3434630420570646,"score_spread":0.2672677113315818,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}