{"id":"W2117015324","doi":"10.1111/j.1755-0998.2011.02998.x","title":"Discovery of single‐nucleotide polymorphisms (SNPs) in the uncharacterized genome of the ascomycete <i>Ophiognomonia clavigignenti‐juglandacearum</i> from 454 sequence data","year":2011,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Biology; Pyrosequencing; Contig; Sanger sequencing; Genetics; Single-nucleotide polymorphism; DNA sequencing; SNP genotyping; Reference genome; Whole genome sequencing; Genome; Computational biology; Population; Genomics; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000360824,0.0001843393,0.0002395699,0.0005300089,0.0002141906,0.0004173231,0.0001925913,0.0002982355,0.0002600185],"category_scores_gemma":[0.0006358154,0.0001144834,0.0004367039,0.0006023487,0.0001726871,0.0001315381,0.0001743619,0.0003163132,0.0001311118],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001774011,"about_ca_system_score_gemma":0.0003211183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001036616,"about_ca_topic_score_gemma":0.00209665,"domain_scores_codex":[0.9997301,0.00004510086,0.00002474207,0.00009928376,0.00007602041,0.00002477234],"domain_scores_gemma":[0.9997547,0.00009072137,0.00006635368,0.00003172374,0.0000315022,0.0000249652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001260795,0.00003042241,0.01296193,0.00007078949,0.00002032091,0.0002080974,0.0001088787,0.0002612317,0.9793839,0.00009099646,0.00005275474,0.006684625],"study_design_scores_gemma":[0.0000311157,0.0006454554,0.4893542,0.00004583492,0.0001885821,0.001663917,0.0002542748,0.003980191,0.4962024,0.0003351425,0.007266272,0.00003254851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927148,0.0003347569,0.004807652,0.00003490191,0.000009685672,0.00002690572,0.001661808,0.00005752848,0.0003519419],"genre_scores_gemma":[0.9631967,0.0003911742,0.02913272,0.00007317814,0.000009500399,0.00005293584,0.006612637,0.0000339947,0.0004971579],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001036616,"threshold_uncertainty_score":0.002061248,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02615776231380076,"score_gpt":0.2228799646452765,"score_spread":0.1967222023314757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}