{"id":"W2117015324","doi":"10.1111/j.1755-0998.2011.02998.x","title":"Discovery of single‐nucleotide polymorphisms (SNPs) in the uncharacterized genome of the ascomycete <i>Ophiognomonia clavigignenti‐juglandacearum</i> from 454 sequence data","year":2011,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Biology; Pyrosequencing; Contig; Sanger sequencing; Genetics; Single-nucleotide polymorphism; DNA sequencing; SNP genotyping; Reference genome; Whole genome sequencing; Genome; Computational biology; Population; Genomics; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002922922,0.0002059902,0.0003066264,0.00005003661,0.00006476571,0.00002064511,0.001511427,0.0001673079,0.00001686399],"category_scores_gemma":[0.0001040255,0.0001366269,0.0001542644,0.0001571072,0.000390705,0.00001483278,0.0006320989,0.0001306245,0.000002409859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000845452,"about_ca_system_score_gemma":0.00006444481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002061755,"about_ca_topic_score_gemma":0.0001912305,"domain_scores_codex":[0.9982361,0.0004220193,0.0004005273,0.0004672272,0.0001848611,0.0002892393],"domain_scores_gemma":[0.9982744,0.00005090114,0.0003063152,0.001292121,0.00003636836,0.00003984161],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000198308,0.0001780813,0.1134402,0.00001138181,0.00009075417,0.00004376394,0.000214914,0.000004748206,0.8857136,0.00001625007,0.00002791451,0.00006013294],"study_design_scores_gemma":[0.0006984925,0.0002880411,0.7336999,0.00003773139,0.000152276,0.00003281007,0.0001578917,0.00002293386,0.2616799,0.000117207,0.002871228,0.0002415727],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945579,0.001529024,0.00006301558,0.0001107786,0.0001079557,0.0002829254,0.002974371,0.00000522936,0.0003688213],"genre_scores_gemma":[0.9982698,0.0001281923,0.0001955571,0.0005968683,0.00005302366,0.00001395507,0.0006841619,0.00002070999,0.00003772886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6240336,"threshold_uncertainty_score":0.5571482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02615776231380076,"score_gpt":0.2228799646452765,"score_spread":0.1967222023314757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}