{"id":"W2117057137","doi":"10.1099/mic.0.28995-0","title":"Mutational analysis of Salmonella translocated effector members SifA and SopD2 reveals domains implicated in translocation, subcellular localization and function","year":2006,"lang":"en","type":"article","venue":"Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; McMaster University; Hospital for Sick Children; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Effector; Biology; Type three secretion system; Secretion; Cell biology; Golgi apparatus; Mutant; Chromosomal translocation; Signal peptide; Salmonella enterica; Cytoplasm; Salmonella; Peptide sequence; Gene; Genetics; Biochemistry; Bacteria; Endoplasmic reticulum","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003845166,0.0001494045,0.0004254251,0.00009580414,0.00006726734,0.000008565466,0.000069731,0.0002299419,0.00009272737],"category_scores_gemma":[0.00001865396,0.00007696844,0.00007234038,0.0008755965,0.0001904084,0.00004219547,0.00001149676,0.00006935975,0.00000206414],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001995056,"about_ca_system_score_gemma":0.000005440074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001610944,"about_ca_topic_score_gemma":0.003738116,"domain_scores_codex":[0.9985656,0.0003297342,0.0004708505,0.0003798265,0.00003454199,0.0002194446],"domain_scores_gemma":[0.9993652,0.000345516,0.0001360192,0.00004878593,0.00006501957,0.00003946832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007783592,0.00004705206,0.2030032,0.000009671168,0.00007822166,0.000001155255,0.00005246481,0.0005160043,0.7942699,0.0001752545,0.00004852947,0.001720774],"study_design_scores_gemma":[0.000469879,0.0001781311,0.9848703,0.000009648256,0.0002297441,0.0000211359,0.000060283,0.001546163,0.01099644,0.0007889682,0.0006539933,0.0001753411],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972587,0.001062724,0.0009379988,0.0003352026,0.00003307469,0.0002232486,0.00009857229,0.0000258353,0.0000246812],"genre_scores_gemma":[0.9972376,0.00009023061,0.00003812958,0.0001477885,0.00002762431,0.00001513268,0.00242375,0.000001476536,0.00001830099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7832734,"threshold_uncertainty_score":0.3138682,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008149965396068614,"score_gpt":0.2054764737032604,"score_spread":0.1973265083071918,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}