{"id":"W2117473595","doi":"10.1128/mbio.01727-14","title":"A Horizontally Acquired Transcription Factor Coordinates <i>Salmonella</i> Adaptations to Host Microenvironments","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Canadian Institutes of Health Research; National Health and Medical Research Council; Medical Research Council Canada","keywords":"Regulon; Effector; Biology; Transcription factor; Operon; Secretion; Flagellum; Cell biology; Transcription (linguistics); Type three secretion system; Gene; Genetics; Virulence; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001456137,0.0004681792,0.0002988381,0.0001930879,0.0001883149,0.0004365216,0.0001875233,0.0004142249,0.001515676],"category_scores_gemma":[0.0002178967,0.0001620413,0.0003486599,0.0001949114,0.0004348379,0.0002553443,0.0004109692,0.0005445835,0.0009147702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006099043,"about_ca_system_score_gemma":0.0002974079,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001128089,"about_ca_topic_score_gemma":0.00110804,"domain_scores_codex":[0.9998171,0.00001665392,0.00001153254,0.00007889916,0.00003621086,0.00003954799],"domain_scores_gemma":[0.999754,0.00004269837,0.00008247737,0.0000312466,0.00004072224,0.00004884871],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000682863,0.000005258453,0.0009671655,0.00002529624,0.000001793754,0.00002037287,0.00001399119,0.00002120115,0.9981224,0.00004147283,0.00002969753,0.0006830239],"study_design_scores_gemma":[0.00001796964,0.0003782026,0.05667293,0.00002493622,0.00003333893,0.0005142709,0.000179439,0.001961701,0.9371294,0.00012825,0.002943326,0.00001629639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907403,0.001188904,0.005357178,0.0001669109,0.00004016489,0.00002132551,0.000546752,0.0002704342,0.001667998],"genre_scores_gemma":[0.9932032,0.0003322287,0.004338587,0.00009815578,0.00002794464,0.00002163482,0.0006769217,0.00007530137,0.001226068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001515676,"threshold_uncertainty_score":0.005070448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01891718091684642,"score_gpt":0.2097205465548136,"score_spread":0.1908033656379672,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}