{"id":"W2117536415","doi":"10.1186/1471-2164-15-891","title":"Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":185,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"U.S. National Library of Medicine; National Institutes of Health; Institut National de la Recherche Agronomique; Agence Nationale de la Recherche; Université de Lorraine","keywords":"Leptosphaeria maculans; Biology; Adaptation (eye); Transposable element; Ascomycota; Host adaptation; Fungus; Magnaporthe grisea; Genetics; Botany; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001446727,0.0002437696,0.0001513505,0.0005650476,0.0002745986,0.0003825008,0.0002494374,0.0003026607,0.0005708209],"category_scores_gemma":[0.0002537109,0.00008993532,0.0002063168,0.0002909919,0.0001507244,0.0001798124,0.0004079008,0.0002354939,0.0001753238],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003557125,"about_ca_system_score_gemma":0.0001636943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00105758,"about_ca_topic_score_gemma":0.001893636,"domain_scores_codex":[0.9998949,0.00001269895,0.000007470351,0.00004437115,0.00001712629,0.00002339592],"domain_scores_gemma":[0.9998412,0.0000283117,0.00005040281,0.00002200634,0.00001914517,0.00003882615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001124942,0.00002775506,0.01865982,0.00005021227,0.00002041997,0.0001568404,0.0001671079,0.0001541938,0.9748285,0.0001302565,0.00002162872,0.005670733],"study_design_scores_gemma":[0.00003810914,0.0006973504,0.8408087,0.00003909097,0.0001261202,0.00394305,0.0009111262,0.004103104,0.1408335,0.0003221716,0.008141368,0.00003632442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998645,0.0002971527,0.0004902272,0.00001481091,0.000001460701,0.000009814624,0.00011114,0.00001776584,0.0004127524],"genre_scores_gemma":[0.9979314,0.0001014791,0.001144528,0.00001709612,0.000001269577,0.000008561025,0.0003908452,0.000007847876,0.000396978],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00105758,"threshold_uncertainty_score":0.002580822,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02465885192677434,"score_gpt":0.2159547283832193,"score_spread":0.1912958764564449,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}