{"id":"W2117536415","doi":"10.1186/1471-2164-15-891","title":"Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":185,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"U.S. National Library of Medicine; National Institutes of Health; Institut National de la Recherche Agronomique; Agence Nationale de la Recherche; Université de Lorraine","keywords":"Leptosphaeria maculans; Biology; Adaptation (eye); Transposable element; Ascomycota; Host adaptation; Fungus; Magnaporthe grisea; Genetics; Botany; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002481628,0.0001852553,0.0001931319,0.00003304681,0.0001430804,0.00003150548,0.0001686602,0.00008793546,0.00001783152],"category_scores_gemma":[0.00005186411,0.0001515535,0.00008321519,0.00008552423,0.00008242961,0.000004874378,0.00006104799,0.00004576963,0.000005830348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002317195,"about_ca_system_score_gemma":0.00008942463,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003663666,"about_ca_topic_score_gemma":0.0008574453,"domain_scores_codex":[0.9988862,0.0001023907,0.0003357483,0.0003109566,0.0001319371,0.0002327712],"domain_scores_gemma":[0.9993628,0.00002428201,0.0001493803,0.0002769433,0.00007012989,0.0001164617],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003569765,0.00004798828,0.02507004,0.00004293082,0.0000405468,0.000001330011,0.0001440995,0.001094176,0.9716509,0.001047945,0.00032717,0.0001759189],"study_design_scores_gemma":[0.001786376,0.0008769281,0.7818649,0.00005369778,0.0002213174,0.00007610414,0.001841727,0.01495275,0.178364,0.0001148961,0.0191598,0.0006874435],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9760509,0.0003017182,0.01952061,0.0000527401,0.0001183315,0.0003678948,0.003327139,0.00001225512,0.0002483727],"genre_scores_gemma":[0.9916981,0.00005732456,0.006838713,0.0001257207,0.0001494797,0.00002109696,0.0009865449,0.00002012021,0.0001029201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7932869,"threshold_uncertainty_score":0.6180173,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02465885192677434,"score_gpt":0.2159547283832193,"score_spread":0.1912958764564449,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}