{"id":"W2117613554","doi":"10.1002/path.4522","title":"Recurrent genomic rearrangements in primary testicular lymphoma","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"Terry Fox Research Institute; Canadian Institutes of Health Research; Dr. Mildred Scheel Stiftung für Krebsforschung; Killam Trusts; Michael Smith Health Research BC","keywords":"CIITA; Biology; Gene rearrangement; Comparative genomic hybridization; Lymphoma; Malignancy; Diffuse large B-cell lymphoma; Fluorescence in situ hybridization; MHC class II; Chromosomal rearrangement; Cancer research; Breakpoint; Pathology; Genetics; Immune system; Major histocompatibility complex; Chromosome; Medicine; Gene; Immunology; Karyotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001064106,0.0001268496,0.0001563851,0.0007116338,0.0001386067,0.0002209406,0.0001240038,0.0001633505,0.001630459],"category_scores_gemma":[0.000339555,0.0000928423,0.00008749616,0.0003407224,0.000231951,0.0001056788,0.0001914948,0.0001299474,0.0001737012],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002278607,"about_ca_system_score_gemma":0.0001121197,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004650384,"about_ca_topic_score_gemma":0.0006828139,"domain_scores_codex":[0.9998769,0.00001941398,0.000008746896,0.00003623883,0.00003609287,0.00002268039],"domain_scores_gemma":[0.9998684,0.0000334926,0.00005053337,0.00001196055,0.00001060417,0.00002504861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007324175,0.00006596185,0.2156042,0.0003187267,0.00007974621,0.02754311,0.0005397466,0.0007413423,0.6894132,0.0004075014,0.0005442452,0.06400973],"study_design_scores_gemma":[0.00006814041,0.0009160463,0.7006282,0.00003122225,0.000237447,0.1490061,0.0003663079,0.001253656,0.1376918,0.0005025248,0.009279442,0.00001905657],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945726,0.002070075,0.001161774,0.0000555295,0.000005466962,0.00002019733,0.0001897187,0.0000800629,0.00184454],"genre_scores_gemma":[0.9991022,0.0002897617,0.0003137676,0.00001495573,0.000006705347,0.000003729953,0.00009614475,0.000004271489,0.0001683649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001630459,"threshold_uncertainty_score":0.005454421,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03578286821644164,"score_gpt":0.2833541948941516,"score_spread":0.24757132667771,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}