{"id":"W2117613554","doi":"10.1002/path.4522","title":"Recurrent genomic rearrangements in primary testicular lymphoma","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"Terry Fox Research Institute; Canadian Institutes of Health Research; Dr. Mildred Scheel Stiftung für Krebsforschung; Killam Trusts; Michael Smith Health Research BC","keywords":"CIITA; Biology; Gene rearrangement; Comparative genomic hybridization; Lymphoma; Malignancy; Diffuse large B-cell lymphoma; Fluorescence in situ hybridization; MHC class II; Chromosomal rearrangement; Cancer research; Breakpoint; Pathology; Genetics; Immune system; Major histocompatibility complex; Chromosome; Medicine; Gene; Immunology; Karyotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008324365,0.00008466993,0.0002779079,0.0001013274,0.0000167359,0.000003808082,0.0000976321,0.00004435248,0.00001496458],"category_scores_gemma":[0.0001248245,0.00004688104,0.00006054352,0.00008204652,0.0000542204,0.00003104104,0.00004120066,0.00007555728,0.00004377288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004263016,"about_ca_system_score_gemma":0.0002212583,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001274752,"about_ca_topic_score_gemma":0.000004074193,"domain_scores_codex":[0.999106,0.0001654842,0.0003257607,0.00006623483,0.0001861182,0.0001503366],"domain_scores_gemma":[0.9993623,0.00007481052,0.000186013,0.0001696868,0.0001004276,0.0001067555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003671868,0.004317082,0.7541105,0.00006511367,0.0003410616,0.02466004,0.005276665,0.00009416004,0.01766605,0.0001504764,0.01322967,0.1764174],"study_design_scores_gemma":[0.008182811,0.001661574,0.9742779,0.00009337657,0.0002314973,0.01092706,0.0001975409,0.00001337949,0.0004559592,0.0004002542,0.003502607,0.00005603192],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920771,0.004526844,0.00001920659,0.001423303,0.0003039677,0.0001399504,0.000001476633,0.000003888105,0.001504331],"genre_scores_gemma":[0.9979548,0.0005236742,0.0006841174,0.0006335806,0.0001350474,0.000003683748,0.000002393021,0.000008504244,0.00005420014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2201675,"threshold_uncertainty_score":0.1911753,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03578286821644164,"score_gpt":0.2833541948941516,"score_spread":0.24757132667771,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}