{"id":"W2117877968","doi":"10.1128/jcm.02512-06","title":"Monitoring of Hepatitis C Virus Quasispecies in Chronic Infection by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Mutation Detection","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Viral quasispecies; Mass spectrometry; Hypervariable region; Virology; clone (Java method); Biology; Virus; Hepatitis C virus; Antibody; Chemistry; Chromatography; Genetics; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005057267,0.0002970709,0.0002920709,0.0007503991,0.0004012505,0.0002860381,0.000220709,0.0004168378,0.0004831142],"category_scores_gemma":[0.0007702689,0.0001372292,0.000122894,0.0003514912,0.0003041014,0.0002201764,0.0001737675,0.0003112466,0.0001679063],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000168793,"about_ca_system_score_gemma":0.0001264242,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007250544,"about_ca_topic_score_gemma":0.0008595216,"domain_scores_codex":[0.9997995,0.00004849967,0.00001434065,0.00004902033,0.00006201232,0.00002663909],"domain_scores_gemma":[0.9994614,0.0001776208,0.0001517579,0.00002678754,0.0001090415,0.00007341694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004588629,0.00007976353,0.05450023,0.00004448281,0.0000255203,0.0003761904,0.0002572947,0.0001605819,0.9369089,0.00009094081,0.0000499555,0.007047412],"study_design_scores_gemma":[0.00006163587,0.002877937,0.4233515,0.00002173591,0.0001165402,0.008248759,0.0003511832,0.009476985,0.5537506,0.0003879135,0.00129491,0.0000602577],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964159,0.0004631358,0.002625402,0.00003351928,0.000007284786,0.00002143655,0.0001296177,0.00003609797,0.0002675855],"genre_scores_gemma":[0.9937624,0.0001824943,0.005638733,0.00003011086,0.000008173462,0.00002567379,0.00008529234,0.000004726654,0.0002624309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007503991,"threshold_uncertainty_score":0.00267458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03314841153247488,"score_gpt":0.3905503542559134,"score_spread":0.3574019427234385,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}