{"id":"W2117910122","doi":"10.1093/molbev/msl065","title":"Test a Clade in Phylogenetic Trees","year":2006,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic","keywords":"Clade; Biology; Phylogenetic tree; Tree (set theory); False discovery rate; Type I and type II errors; Multiple comparisons problem; Statistics; Taxon; Word error rate; Evolutionary biology; Mathematics; Computer science; Genetics; Artificial intelligence; Ecology; Gene; Combinatorics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01631575,0.0009504112,0.001442692,0.003275511,0.00152463,0.002212435,0.002570718,0.002065893,0.003212483],"category_scores_gemma":[0.08707947,0.0006901731,0.001608257,0.002143026,0.002633994,0.004967185,0.003845321,0.002851472,0.001065084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004643699,"about_ca_system_score_gemma":0.001108728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005215359,"about_ca_topic_score_gemma":0.000559215,"domain_scores_codex":[0.9859369,0.008471126,0.0006845141,0.002111249,0.002445942,0.0003501525],"domain_scores_gemma":[0.9142486,0.06817691,0.005077168,0.006894512,0.004379222,0.001223585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0008410702,0.0002967931,0.1165005,0.0005808813,0.001162658,0.001252755,0.002478112,0.08182723,0.04086889,0.1826171,0.004199324,0.5673748],"study_design_scores_gemma":[0.000134954,0.000830054,0.01739475,0.000164779,0.000245499,0.002008517,0.0006313134,0.6312681,0.02022238,0.3174925,0.009436202,0.0001710303],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02666499,0.0001444165,0.97144,0.0001439569,0.00004674512,0.00005011696,0.0001099542,0.0004275648,0.0009723542],"genre_scores_gemma":[0.2321756,0.0001205968,0.766079,0.0002155793,0.0000985725,0.0001794238,0.0004562878,0.0002195122,0.0004553969],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01631575,"threshold_uncertainty_score":0.0862869,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003815505458516538,"score_gpt":0.2203875194763658,"score_spread":0.2165720140178493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}