{"id":"W2118053361","doi":"10.1111/age.12333","title":"Association of <i><scp>TLR</scp>4</i> polymorphisms with <i>Mycobacterium avium</i> subspecies <i>paratuberculosis</i> infection status in Canadian Holsteins","year":2015,"lang":"en","type":"article","venue":"Animal Genetics","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Guelph","funders":"","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Paratuberculosis; Single-nucleotide polymorphism; SNP; Haplotype; Genetics; Subspecies; Immunology; Mycobacterium; Gene; Genotype; Zoology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004528139,0.0002522948,0.0004433617,0.0003835322,0.00005501835,0.00006657777,0.0001007012,0.0002471661,0.00003619501],"category_scores_gemma":[0.0005631582,0.0002338676,0.00008343311,0.0008164314,0.00007834841,0.0001629662,0.00004872026,0.0003249867,0.00006737821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009043536,"about_ca_system_score_gemma":0.001553692,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1364824,"about_ca_topic_score_gemma":0.3225925,"domain_scores_codex":[0.9973545,0.0001192651,0.0004105974,0.0003399684,0.0007291755,0.001046507],"domain_scores_gemma":[0.997603,0.0001528117,0.0001809289,0.0003316213,0.0005749055,0.001156719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001399209,0.0001836672,0.9529722,0.00005953356,0.00007576319,0.00005560427,0.0004760514,0.00002045662,0.0303017,0.00003399564,0.01554419,0.0001369394],"study_design_scores_gemma":[0.001885258,0.002109138,0.8857919,0.00008482864,0.0001240759,0.00003188574,0.0001680418,0.00004927847,0.0493717,0.00001425874,0.06025149,0.0001181634],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871483,0.0008217638,0.000005450854,0.000545034,0.0001602675,0.0004834473,0.0001623057,0.00003732022,0.01063612],"genre_scores_gemma":[0.9963034,0.001631392,0.0003294417,0.0005667732,0.0002290194,0.0000454068,0.0001582203,0.00004606121,0.0006902707],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1861101,"threshold_uncertainty_score":0.9536844,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02056241980022857,"score_gpt":0.2595496638257618,"score_spread":0.2389872440255333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}