{"id":"W2118299395","doi":"10.1105/tpc.114.123950","title":"<i>Arabidopsis</i> Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways","year":2014,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Light effects on plants","field":"Agricultural and Biological Sciences","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Ste. Anne's Hospital","funders":"National Institute of General Medical Sciences; National Institutes of Health; Yale University","keywords":"Promoter; Biology; Phytochrome A; Phytochrome; Transcription factor; Chromatin immunoprecipitation; Arabidopsis; Abscisic acid; Gene; Genetics; Transcription (linguistics); Cell biology; RNA polymerase II; Gene expression; Mutant; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008413416,0.0003769263,0.0001506033,0.00014988,0.0001952822,0.0003151228,0.000177997,0.0001916139,0.001894433],"category_scores_gemma":[0.00007971322,0.0001371777,0.0001767768,0.0001027526,0.0001883488,0.0001662393,0.0002364287,0.0003716895,0.0007666949],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003534214,"about_ca_system_score_gemma":0.0001569289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007904126,"about_ca_topic_score_gemma":0.002145103,"domain_scores_codex":[0.9998797,0.000009532509,0.000003825571,0.00006179389,0.00002727285,0.00001783948],"domain_scores_gemma":[0.9999304,0.00001368865,0.00001420869,0.00001448301,0.000009823732,0.00001746406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000007233335,0.000002659858,0.0001223481,0.00001198222,0.000001208963,0.000009714848,0.000002637003,0.00001149564,0.9991133,0.00004159675,0.00002364192,0.0006521686],"study_design_scores_gemma":[0.00001095553,0.00006994024,0.03217499,0.00001150561,0.00001452864,0.0002028431,0.00002730845,0.0008950626,0.9601793,0.0001687746,0.006238442,0.000006324901],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9676792,0.007056049,0.01443065,0.0002716689,0.00008477968,0.00004337161,0.001886489,0.0006302702,0.007917476],"genre_scores_gemma":[0.9876221,0.001161927,0.004552854,0.0001976718,0.00001896755,0.00003072662,0.001422196,0.00009314498,0.00490042],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001894433,"threshold_uncertainty_score":0.006337523,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01867327334612191,"score_gpt":0.1933092248112959,"score_spread":0.174635951465174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}