{"id":"W2118790593","doi":"10.4049/jimmunol.179.5.3026","title":"Severe Depletion of Mucosal CD4+ T Cells in AIDS-Free Simian Immunodeficiency Virus-Infected Sooty Mangabeys","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":277,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Yerkes National Primate Research Center, Emory University; National Institutes of Health; National Heart, Lung, and Blood Institute; Center for AIDS Research, University of Washington; Emory University","keywords":"Simian immunodeficiency virus; Biology; Immune system; Immunology; Virology; Virus; Immunodeficiency; Context (archaeology); Immunity; Viral replication; T cell","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002103187,0.0002031178,0.0004896459,0.0004740375,0.0001480664,0.000005816834,0.0008127803,0.0002961516,0.0005052314],"category_scores_gemma":[0.0002704657,0.0001335384,0.0001708368,0.0003694682,0.0006485373,0.0001183535,0.0002064398,0.0009331873,0.000279743],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001618421,"about_ca_system_score_gemma":0.0001840248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000581999,"about_ca_topic_score_gemma":0.0004208176,"domain_scores_codex":[0.9974626,0.0007837221,0.0008770356,0.0001361001,0.0001049911,0.0006355564],"domain_scores_gemma":[0.9980147,0.0006595088,0.0005463047,0.0005181484,0.0002339902,0.00002732527],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00249035,0.000628812,0.005164254,0.00001248043,0.0004484844,0.00007351023,0.0011034,0.00003187492,0.9812981,0.000224359,0.0006621157,0.007862208],"study_design_scores_gemma":[0.01126912,0.004653565,0.2412894,0.0001079418,0.0001471465,0.002127587,0.002482075,0.000001964101,0.7315583,0.000916807,0.005151315,0.0002947255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878172,0.009739242,0.0004101175,0.0002528351,0.0005463251,0.0002191758,0.00004618857,0.00001407504,0.0009548761],"genre_scores_gemma":[0.9982321,0.001247909,0.0001357502,0.00004099505,0.00002317766,0.00000208816,0.00002132114,0.00001667668,0.0002800229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2497398,"threshold_uncertainty_score":0.553193,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009893325673641885,"score_gpt":0.2468546461135737,"score_spread":0.2369613204399318,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}