{"id":"W2118912223","doi":"10.1128/jb.00675-06","title":"The Genome Sequence of <i>Mannheimia haemolytica</i> A1: Insights into Virulence, Natural Competence, and <i>Pasteurellaceae</i> Phylogeny","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Guelph","funders":"U.S. Department of Agriculture","keywords":"Biology; Virulence; Genome; Bacterial adhesin; Genetics; Gene; Comparative genomics; Microbiology; Pasteurellaceae; Whole genome sequencing; Pilin; Phylogenetics; Phylogenetic tree; Virology; Pilus; Haemophilus influenzae; Genomics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002612399,0.001227131,0.0007847119,0.001611418,0.0006240663,0.001017162,0.0004204131,0.0008543204,0.00253853],"category_scores_gemma":[0.001003734,0.0004200838,0.0009397438,0.003083927,0.0002335784,0.0005768852,0.0004747552,0.001177983,0.001995494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009044964,"about_ca_system_score_gemma":0.001477133,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01126073,"about_ca_topic_score_gemma":0.008302682,"domain_scores_codex":[0.9997713,0.00002193844,0.00001860401,0.0000854121,0.00005588304,0.00004690044],"domain_scores_gemma":[0.9994286,0.00009921625,0.0001876171,0.00003445589,0.0001324679,0.000117542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002436636,0.0001407663,0.01728679,0.006059751,0.0002319503,0.0008299437,0.0008493105,0.00242517,0.8786564,0.0005471084,0.01233404,0.0782021],"study_design_scores_gemma":[0.0002918751,0.001710027,0.5361578,0.001567737,0.00140664,0.003713895,0.0009341492,0.00867169,0.0919944,0.00129643,0.3519945,0.0002608999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6604062,0.03044261,0.01808346,0.001840169,0.0005365975,0.0002711891,0.279716,0.003023084,0.005680608],"genre_scores_gemma":[0.2761839,0.01625932,0.04273182,0.0003514132,0.0002306984,0.0001855582,0.6573641,0.0004550905,0.006238053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01126073,"threshold_uncertainty_score":0.02239037,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00885158660596187,"score_gpt":0.2400469133293497,"score_spread":0.2311953267233879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}