{"id":"W2118912223","doi":"10.1128/jb.00675-06","title":"The Genome Sequence of <i>Mannheimia haemolytica</i> A1: Insights into Virulence, Natural Competence, and <i>Pasteurellaceae</i> Phylogeny","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Guelph","funders":"U.S. Department of Agriculture","keywords":"Biology; Virulence; Genome; Bacterial adhesin; Genetics; Gene; Comparative genomics; Microbiology; Pasteurellaceae; Whole genome sequencing; Pilin; Phylogenetics; Phylogenetic tree; Virology; Pilus; Haemophilus influenzae; Genomics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003626686,0.0001658267,0.0004206406,0.0001792776,0.00031315,0.0000331364,0.0003263516,0.0001797513,0.00006193452],"category_scores_gemma":[0.0000649492,0.0001040314,0.0001430653,0.0001958348,0.001183006,0.000115883,0.0001397716,0.0004982079,0.00003090158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003924692,"about_ca_system_score_gemma":0.0001449076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001573003,"about_ca_topic_score_gemma":0.00008643276,"domain_scores_codex":[0.9984341,0.0003627512,0.0006563572,0.0001760398,0.00005139525,0.0003193406],"domain_scores_gemma":[0.9986085,0.0003496817,0.0004515674,0.000211874,0.0003351236,0.00004319683],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002753431,0.00007545445,0.001517138,0.00001920203,0.0001176465,0.00002246047,0.00006869771,0.00001343484,0.994005,0.002025412,0.0008809331,0.0009793148],"study_design_scores_gemma":[0.004649455,0.002499934,0.09202944,0.0001766867,0.0002800732,0.007075687,0.0004815639,0.00005843415,0.1368695,0.008002771,0.7471312,0.0007451904],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9758662,0.02231104,0.00006579414,0.0002668778,0.00093365,0.0001207849,0.00001496196,0.000007556148,0.0004131187],"genre_scores_gemma":[0.9975553,0.001688193,0.0000771618,0.0001104021,0.0001084755,0.000002509668,0.00001754166,0.00001005588,0.0004303983],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8571354,"threshold_uncertainty_score":0.4358834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00885158660596187,"score_gpt":0.2400469133293497,"score_spread":0.2311953267233879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}