{"id":"W2118989433","doi":"10.1101/cshperspect.a021204","title":"Comparative Genomics of Mycobacteria: Some Answers, Yet More New Questions","year":2014,"lang":"en","type":"review","venue":"Cold Spring Harbor Perspectives in Medicine","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Biology; Virulence; Tuberculosis; Mycobacterium tuberculosis; Genomics; Comparative genomics; Genome; Evolutionary biology; Disease; Genetics; Computational biology; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001125912,0.0006015627,0.005662276,0.0009718673,0.0000603119,0.00000811975,0.0004310264,0.0004776116,0.0002076664],"category_scores_gemma":[0.002714954,0.0004631269,0.000413667,0.0006192749,0.0009180435,0.00008458247,0.0001585753,0.001448693,0.00005341027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001083956,"about_ca_system_score_gemma":0.001082114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008798397,"about_ca_topic_score_gemma":0.00004196681,"domain_scores_codex":[0.9963104,0.0005037963,0.001276336,0.0008441425,0.0004048368,0.0006604748],"domain_scores_gemma":[0.9966851,0.001091687,0.0005253492,0.0009383589,0.0002214671,0.0005380702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001923938,0.003927995,0.003680724,0.1370509,0.01481817,0.001434803,0.03054412,0.00008961856,0.008800131,0.6011538,0.1112943,0.08528151],"study_design_scores_gemma":[0.001683375,0.000761647,0.004572755,0.02919404,0.00110433,0.00002132564,0.0007255996,0.00005871741,0.00001694452,0.00008373343,0.9613715,0.0004060312],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008542627,0.9942383,0.0001272275,0.002142933,0.000413893,0.001493861,0.00003207674,0.00006355379,0.0006338986],"genre_scores_gemma":[0.001825184,0.9946005,0.001272978,0.0002010794,0.001636948,0.00009610206,0.00002484804,0.00007743048,0.0002649259],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8500772,"threshold_uncertainty_score":0.999782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08843536356125244,"score_gpt":0.4213802399288736,"score_spread":0.3329448763676212,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}