{"id":"W2119090297","doi":"10.1093/nar/gkv584","title":"A<i>cis</i>-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS<i>200</i>transposition","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Transposase; Genetics; Transfer RNA; RNA; Transposition (logic); Open reading frame; Transposable element; Gene; Genome; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004864382,0.0002183908,0.0002120418,0.0001785414,0.0001670859,0.0001287925,0.0005288249,0.0006731396,0.0001623993],"category_scores_gemma":[0.00007405727,0.0002031528,0.00005287395,0.0002657381,0.000251802,0.00001147558,0.0004864788,0.0005844118,0.00003608478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003855555,"about_ca_system_score_gemma":0.0002150868,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008508367,"about_ca_topic_score_gemma":0.0001366586,"domain_scores_codex":[0.9978416,0.0001628901,0.0002338173,0.0006608428,0.0004809871,0.0006198529],"domain_scores_gemma":[0.9986233,0.00001239308,0.00003936098,0.0005854919,0.0003462734,0.0003932289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004406568,0.00004162903,0.001345759,0.00002302087,0.00004067802,0.0000127456,0.0002727624,0.000003546447,0.980538,0.00004360676,0.009898291,0.007339298],"study_design_scores_gemma":[0.00113509,0.00139286,0.006490096,0.00001692786,0.00001169985,0.0000657555,0.000249198,0.00002563521,0.8759021,0.0007680646,0.1136517,0.0002909086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953054,0.0005138547,0.00006887403,0.00200728,0.0002224051,0.0003906873,0.0003283887,0.00002394597,0.001139227],"genre_scores_gemma":[0.9967972,0.0002289512,0.001079041,0.0007276802,0.0003556256,0.00001801995,0.0001775207,0.0000427348,0.0005732287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1046359,"threshold_uncertainty_score":0.8284329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02467963444390468,"score_gpt":0.3043421194953194,"score_spread":0.2796624850514147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}