{"id":"W2119177774","doi":"10.1093/gbe/evu043","title":"Chromera velia, Endosymbioses and the Rhodoplex Hypothesis—Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles, and Haptophytes (CASH Lineages)","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Deutsche Forschungsgemeinschaft","keywords":"Biology; Plastid; Endosymbiosis; Eukaryote; Haptophyte; Evolutionary biology; Phylogenomics; Peridinin; Genetics; Genome; Phylogenetics; Botany; Gene; Algae; Clade; Ecology; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002940965,0.0002680907,0.0002159068,0.0007776068,0.0005167469,0.001014237,0.0004423806,0.0004327268,0.0004715417],"category_scores_gemma":[0.0002378581,0.0001474867,0.0002696313,0.000381885,0.0006180215,0.000642872,0.0009074956,0.0004950141,0.0001250531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003837289,"about_ca_system_score_gemma":0.000365506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001480172,"about_ca_topic_score_gemma":0.001404865,"domain_scores_codex":[0.9998899,0.000009457735,0.000006016114,0.00005080878,0.00001447443,0.00002943611],"domain_scores_gemma":[0.999827,0.00002960693,0.00005498352,0.00002089357,0.00002118684,0.00004643848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004489641,0.0000370001,0.09821735,0.0001937534,0.00006965802,0.000647256,0.001114669,0.0007439321,0.8672307,0.004114608,0.0001015076,0.02708058],"study_design_scores_gemma":[0.00002496665,0.0003808611,0.9074448,0.0001057125,0.0001168632,0.001448469,0.002458405,0.00393493,0.07203534,0.003253906,0.008747654,0.0000479946],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995604,0.00144351,0.001728232,0.00009502691,0.000005337432,0.00000713537,0.0000897627,0.00002920882,0.0009977478],"genre_scores_gemma":[0.9978372,0.0004686437,0.00109731,0.00003658158,0.000004284134,0.000005767159,0.0001606498,0.000007996872,0.0003816268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001480172,"threshold_uncertainty_score":0.002943099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005987607017957291,"score_gpt":0.1969924049239343,"score_spread":0.191004797905977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}