{"id":"W2119177774","doi":"10.1093/gbe/evu043","title":"Chromera velia, Endosymbioses and the Rhodoplex Hypothesis—Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles, and Haptophytes (CASH Lineages)","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Deutsche Forschungsgemeinschaft","keywords":"Biology; Plastid; Endosymbiosis; Eukaryote; Haptophyte; Evolutionary biology; Phylogenomics; Peridinin; Genetics; Genome; Phylogenetics; Botany; Gene; Algae; Clade; Ecology; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003883783,0.0001747304,0.0002107537,0.00005305179,0.0002377749,0.00002291888,0.0001042478,0.0002591529,0.000008480492],"category_scores_gemma":[0.000142089,0.0001424986,0.00003432652,0.00006877595,0.0005645297,0.00001062283,0.0001547124,0.0001340534,0.000005108291],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000209622,"about_ca_system_score_gemma":0.00002657161,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002295089,"about_ca_topic_score_gemma":0.0001242233,"domain_scores_codex":[0.9988971,0.000223473,0.0001790405,0.0003981404,0.00004239329,0.0002598085],"domain_scores_gemma":[0.9995553,0.00009746767,0.00008038407,0.0001697612,0.00003304592,0.0000639793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008955477,0.00007905175,0.4022038,0.00009077862,0.0001259207,0.000001750728,0.0001816577,0.00003043605,0.571958,0.01922772,0.0001367143,0.005068582],"study_design_scores_gemma":[0.001896311,0.0003944619,0.9847565,0.00001393994,0.00003390402,0.00004096803,0.00005791939,0.0002183321,0.001804618,0.008047563,0.00251197,0.0002234616],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9826893,0.01523649,0.001296686,0.0001876176,0.0001058601,0.0002460985,0.00005461285,0.00001163429,0.0001717705],"genre_scores_gemma":[0.9970906,0.001871038,0.0005017802,0.0001311437,0.0002365603,0.00001840621,0.00007557984,0.000008299364,0.00006656375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5825527,"threshold_uncertainty_score":0.5810924,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005987607017957291,"score_gpt":0.1969924049239343,"score_spread":0.191004797905977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}