{"id":"W2119318184","doi":"10.1128/jb.01927-05","title":"Comparison of the Genome Sequence of the Poultry Pathogen<i>Bordetella avium</i>with Those of<i>B. bronchiseptica</i>,<i>B. pertussis</i>, and<i>B. parapertussis</i>Reveals Extensive Diversity in Surface Structures Associated with Host Interaction","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health; Wellcome Trust; U.S. Department of Agriculture","keywords":"Biology; Bordetella bronchiseptica; Bordetella; Microbiology; Bordetella pertussis; Virulence; Gene; Genetics; Genome; Pathogen; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001024861,0.0003101758,0.0002662364,0.0007108232,0.0002893335,0.0003788352,0.000229208,0.0003865985,0.0008379371],"category_scores_gemma":[0.0003712389,0.0001456023,0.0005519371,0.0007320232,0.0001913403,0.0002248972,0.0002209975,0.0004622551,0.0003789174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004569074,"about_ca_system_score_gemma":0.0006098618,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005609124,"about_ca_topic_score_gemma":0.005906076,"domain_scores_codex":[0.9998829,0.00001151064,0.000008436121,0.00004272236,0.00003223891,0.00002219438],"domain_scores_gemma":[0.999718,0.00007360162,0.00008243154,0.00001621351,0.00004073371,0.00006887755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007285299,0.0001015352,0.02458198,0.0004769657,0.00009732091,0.0005501713,0.0003255951,0.0004325667,0.9573356,0.0002091667,0.0003219731,0.01483853],"study_design_scores_gemma":[0.00008101774,0.0007389507,0.8884408,0.0001511552,0.000371765,0.00285735,0.0008149832,0.003287619,0.08100668,0.0003417312,0.0218631,0.00004486171],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861453,0.002097724,0.001997748,0.0001157069,0.00002798008,0.00003440355,0.008279416,0.00004264101,0.001259122],"genre_scores_gemma":[0.890779,0.002272764,0.01270924,0.000182895,0.00004247198,0.00005646038,0.09188756,0.00005545062,0.002014153],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005609124,"threshold_uncertainty_score":0.01115292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0223507848325597,"score_gpt":0.2639594937383462,"score_spread":0.2416087089057865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}