{"id":"W2119318184","doi":"10.1128/jb.01927-05","title":"Comparison of the Genome Sequence of the Poultry Pathogen<i>Bordetella avium</i>with Those of<i>B. bronchiseptica</i>,<i>B. pertussis</i>, and<i>B. parapertussis</i>Reveals Extensive Diversity in Surface Structures Associated with Host Interaction","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health; Wellcome Trust; U.S. Department of Agriculture","keywords":"Biology; Bordetella bronchiseptica; Bordetella; Microbiology; Bordetella pertussis; Virulence; Gene; Genetics; Genome; Pathogen; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003218502,0.0002173233,0.0008428667,0.00009937381,0.0001713915,0.000008058813,0.0003196352,0.000247161,0.00005039025],"category_scores_gemma":[0.0001327123,0.0001092565,0.0001590744,0.00027541,0.0005777701,0.0001329814,0.0002029645,0.0005073778,3.793446e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006198032,"about_ca_system_score_gemma":0.0001182524,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005135979,"about_ca_topic_score_gemma":0.0002742829,"domain_scores_codex":[0.9979946,0.0007292458,0.0008025833,0.0001843122,0.00005891071,0.0002303707],"domain_scores_gemma":[0.9970713,0.0003845425,0.001828783,0.0002602813,0.0004344552,0.00002064605],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004820346,0.0001301328,0.438208,0.00001498914,0.0001307007,0.000001072888,0.0003238108,0.0001826826,0.5604085,0.00004092314,0.00002988997,0.00004731697],"study_design_scores_gemma":[0.001368931,0.0007552464,0.9572778,0.0002172989,0.0001996525,0.0002641858,0.0005202927,0.000003157317,0.0388893,0.00007219512,0.0003050573,0.0001268431],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998089,0.0007321748,0.00001641482,0.0001926099,0.0005647754,0.0002100303,0.0001409663,0.000004515566,0.00004956713],"genre_scores_gemma":[0.9996387,0.0001110005,0.00008232309,0.00005716656,0.00002715671,0.000001138475,0.00001442793,0.00001195066,0.00005618068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5215192,"threshold_uncertainty_score":0.4455352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0223507848325597,"score_gpt":0.2639594937383462,"score_spread":0.2416087089057865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}