{"id":"W2119817626","doi":"10.1128/jvi.01740-13","title":"Polyomavirus Large T Antigen Binds Symmetrical Repeats at the Viral Origin in an Asymmetrical Manner","year":2013,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal Clinical Research Institute","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Biology; Direct repeat; Tandem repeat; Origin of replication; Inverted repeat; DNA replication; Origin recognition complex; DNA; Molecular biology; Consensus sequence; Genetics; Long terminal repeat; Virology; Eukaryotic DNA replication; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000544804,0.0001921876,0.0005568833,0.0008224452,0.0001055913,0.00002621279,0.0002569641,0.0003435097,0.00084328],"category_scores_gemma":[0.0003120246,0.0001052304,0.0002609653,0.0007103161,0.0001639103,0.0002122192,0.0001038959,0.0008224876,0.0002750719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001642593,"about_ca_system_score_gemma":0.000135957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001284872,"about_ca_topic_score_gemma":0.00002065638,"domain_scores_codex":[0.9977806,0.0002797823,0.0007425024,0.000222641,0.0004229412,0.0005515883],"domain_scores_gemma":[0.9985722,0.0002157756,0.0003151998,0.0003288728,0.0001284199,0.0004395729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002718308,0.003670859,0.9047828,0.00002312391,0.0004493512,0.005265846,0.0002574474,0.0000434392,0.0299759,0.001586535,0.0295781,0.02164832],"study_design_scores_gemma":[0.004471998,0.002452187,0.9693837,0.00003136268,0.0001887441,0.002587276,0.0000813525,0.0006001476,0.0008948355,0.0004028835,0.01873693,0.0001686334],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881024,0.005164437,0.00002600947,0.004959986,0.0004210205,0.0001970911,0.000007774954,0.000014624,0.001106666],"genre_scores_gemma":[0.9955508,0.0005086544,0.0001114021,0.002550373,0.0004814251,0.000005440916,0.00000598323,0.00002545004,0.0007605199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06460088,"threshold_uncertainty_score":0.9233325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01863617457274445,"score_gpt":0.3168334734402317,"score_spread":0.2981972988674872,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}