{"id":"W2119894968","doi":"10.1128/cvi.00496-12","title":"Host Responses to Persistent Mycobacterium avium Subspecies <i>paratuberculosis</i> Infection in Surgically Isolated Bovine Ileal Segments","year":2012,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Paratuberculosis; Lamina propria; Biology; Mycobacterium avium subspecies paratuberculosis; Mesenteric lymph nodes; Microbiology; Mycobacterium; Immune system; Lymph node; Ileum; CD8; Immunology; Virology; Epithelium; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009515814,0.0002553045,0.000748187,0.0002905924,0.00009168781,0.00003329197,0.00009922348,0.0003107364,0.0004643282],"category_scores_gemma":[0.001340375,0.0002036131,0.0002250365,0.000406445,0.0001053531,0.0001899193,0.0002667069,0.0006146756,0.0002711605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007179904,"about_ca_system_score_gemma":0.00008032294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002616475,"about_ca_topic_score_gemma":0.00007901341,"domain_scores_codex":[0.9973204,0.0004620623,0.0008346613,0.0004347285,0.0001632754,0.0007848786],"domain_scores_gemma":[0.9980807,0.00073337,0.00009506733,0.0003715807,0.0001701275,0.000549152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01130271,0.00115924,0.9738055,0.00004695056,0.0002102016,0.00004133516,0.0001146299,1.173276e-7,0.009086276,0.00001986912,0.002964305,0.00124884],"study_design_scores_gemma":[0.003686257,0.00435311,0.9697083,0.00009130414,0.0001091841,0.0001946926,0.00004591712,0.00001252077,0.0004661231,0.000004377583,0.02112802,0.0002002435],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901368,0.001621358,0.00001056019,0.006467532,0.0007677017,0.0005154466,0.00002097718,0.00006488193,0.0003947135],"genre_scores_gemma":[0.9908911,0.006164558,0.00005757288,0.001457783,0.0004711735,0.00007064416,0.00006189464,0.00002389994,0.0008013985],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01816371,"threshold_uncertainty_score":0.8303099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04090593119533886,"score_gpt":0.3527985440580338,"score_spread":0.311892612862695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}