{"id":"W2119894968","doi":"10.1128/cvi.00496-12","title":"Host Responses to Persistent Mycobacterium avium Subspecies <i>paratuberculosis</i> Infection in Surgically Isolated Bovine Ileal Segments","year":2012,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Paratuberculosis; Lamina propria; Biology; Mycobacterium avium subspecies paratuberculosis; Mesenteric lymph nodes; Microbiology; Mycobacterium; Immune system; Lymph node; Ileum; CD8; Immunology; Virology; Epithelium; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001932285,0.0002649712,0.0002759884,0.0001530198,0.0001299697,0.0004216043,0.0001662947,0.0003845686,0.0005962375],"category_scores_gemma":[0.000209533,0.0001784846,0.000203415,0.00008564415,0.0002377855,0.0001899949,0.000169093,0.0007167435,0.0001901399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000471557,"about_ca_system_score_gemma":0.000175429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001403014,"about_ca_topic_score_gemma":0.001775086,"domain_scores_codex":[0.9997382,0.00003728409,0.00001835477,0.00006646531,0.00003808484,0.0001016332],"domain_scores_gemma":[0.9997275,0.00005944194,0.00008169487,0.00002141888,0.00002693258,0.00008295116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002542737,0.00002908799,0.0005747828,0.00002275491,0.000002876667,0.00004324544,0.00003352419,0.00002896053,0.9986206,0.000009263794,0.000009627991,0.0003709217],"study_design_scores_gemma":[0.00007645835,0.008031621,0.100862,0.000032204,0.00007252295,0.001072164,0.0005261524,0.001559596,0.8862933,0.00005607464,0.001399896,0.00001799524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988071,0.0004966425,0.0003406779,0.00002476312,0.000008918643,0.000007409704,0.00006670936,0.00001442215,0.0002334571],"genre_scores_gemma":[0.9987643,0.0002550898,0.0003420963,0.0000340905,0.000005754801,0.00001475303,0.0001915076,0.00000599451,0.0003864179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001403014,"threshold_uncertainty_score":0.003421426,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04090593119533886,"score_gpt":0.3527985440580338,"score_spread":0.311892612862695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}