{"id":"W2120093319","doi":"10.1093/gbe/evr119","title":"Extensive Genomic Variation within Clonal Complexes of Neisseria meningitidis","year":2011,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Toronto Public Health; Public Health Agency of Canada; Mount Sinai Hospital","funders":"Sanofi Pasteur; Public Health Agency of Canada","keywords":"Biology; Neisseria meningitidis; Genetics; Genome; Multilocus sequence typing; Gene; Virulence; Homologous recombination; Genome evolution; Population; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038168,0.0001542774,0.0002371783,0.000965283,0.0002298185,0.0003870256,0.0001977205,0.0003130877,0.0004780497],"category_scores_gemma":[0.001956543,0.0001290424,0.0001808383,0.0005828336,0.0003254768,0.0001874286,0.0003862383,0.0002359132,0.0001107036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002289315,"about_ca_system_score_gemma":0.0001218848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001540305,"about_ca_topic_score_gemma":0.002578055,"domain_scores_codex":[0.9994338,0.0001215989,0.00003577763,0.0002056286,0.0001392525,0.00006395375],"domain_scores_gemma":[0.9990705,0.0003203993,0.0003179469,0.0001194561,0.00008531088,0.00008639786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000401456,0.00008660868,0.3595465,0.0001076661,0.0003145198,0.0005062722,0.0009868883,0.0005528511,0.6133294,0.0006408975,0.0001603103,0.02336669],"study_design_scores_gemma":[0.00000537742,0.00009363521,0.9911814,0.000007044447,0.00004475083,0.000670256,0.0001458214,0.0005080496,0.006470736,0.0001740017,0.000689782,0.00000904374],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998531,0.0002095816,0.0007075898,0.00001211791,0.000001853557,0.000007964228,0.0001609333,0.000007740772,0.0003612477],"genre_scores_gemma":[0.9989729,0.00005865185,0.0006132723,0.00001293676,0.000002187493,0.0000047354,0.0002736581,0.000003761547,0.00005805213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001540305,"threshold_uncertainty_score":0.003062665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02171658022479557,"score_gpt":0.2310368117292074,"score_spread":0.2093202315044118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}