{"id":"W2120093319","doi":"10.1093/gbe/evr119","title":"Extensive Genomic Variation within Clonal Complexes of Neisseria meningitidis","year":2011,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Toronto Public Health; Public Health Agency of Canada; Mount Sinai Hospital","funders":"Sanofi Pasteur; Public Health Agency of Canada","keywords":"Biology; Neisseria meningitidis; Genetics; Genome; Multilocus sequence typing; Gene; Virulence; Homologous recombination; Genome evolution; Population; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001550178,0.0001052304,0.0001958855,0.0000748195,0.0001605535,0.000002612404,0.00005784418,0.0002165689,0.000506052],"category_scores_gemma":[0.00002248626,0.00009230238,0.00003795771,0.00006729633,0.0001688906,0.00006397894,0.00004657611,0.00008549383,0.00005949062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002261836,"about_ca_system_score_gemma":0.00002726422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005957851,"about_ca_topic_score_gemma":0.00004293515,"domain_scores_codex":[0.9992845,0.000114337,0.0002464111,0.0001918037,0.000003643779,0.0001592967],"domain_scores_gemma":[0.9996069,0.00002529536,0.000158108,0.0001109019,0.00008512392,0.00001364056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001894979,0.00004044972,0.02557904,0.00000653739,0.00009370296,7.337009e-8,0.000623341,0.000001750754,0.951481,0.021831,0.00003479797,0.0001188486],"study_design_scores_gemma":[0.0005144553,0.0003567292,0.9761865,0.000005134455,0.00004637672,0.00006331316,0.0001346987,0.000004961554,0.01519246,0.006099007,0.001280545,0.0001157806],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956626,0.001504176,0.00153591,0.00002816542,0.0007781539,0.0001128352,0.00005395042,0.00003095559,0.0002933086],"genre_scores_gemma":[0.9992657,0.00005593941,0.0003205758,0.0000152865,0.00005205403,0.000009611947,0.0001533511,0.000005887048,0.0001216467],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9506075,"threshold_uncertainty_score":0.5540915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02171658022479557,"score_gpt":0.2310368117292074,"score_spread":0.2093202315044118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}