{"id":"W2120173546","doi":"10.1093/bioinformatics/btl506","title":"Predicted function of the vaccinia virus G5R protein","year":2006,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Center for Research Resources; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; University of California, San Francisco; U.S. Public Health Service; National Institutes of Health","keywords":"Vaccinia; Virology; Virus; Function (biology); Biology; Orthopoxvirus; Computational biology; Computer science; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001360599,0.00008417441,0.0001137074,0.0000531745,0.0001137378,0.000009027846,0.0002094646,0.0001396938,0.0002526941],"category_scores_gemma":[0.00006315122,0.00005171412,0.00006721684,0.0001561557,0.0001030979,0.0001005403,0.00008756539,0.0001700386,0.0003105446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001860737,"about_ca_system_score_gemma":0.00007276757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000161927,"about_ca_topic_score_gemma":0.00004768029,"domain_scores_codex":[0.999304,0.00004539332,0.0003117269,0.00005308963,0.00005739056,0.0002283816],"domain_scores_gemma":[0.9994982,0.00002385023,0.0001378704,0.0002640226,0.00006458572,0.00001139577],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004055668,0.0001733432,0.002238295,0.0001385101,0.0001228246,4.664462e-7,0.0002745714,0.00001172394,0.9198422,0.003789789,0.05590967,0.01709303],"study_design_scores_gemma":[0.001589117,0.0003085195,0.08996739,0.00006190396,0.00003502239,0.00001329556,0.0001195329,0.0002549757,0.7239664,0.0006399216,0.1828847,0.0001592398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9785008,0.000385248,0.0006354685,0.0001288921,0.0003742215,0.0006038891,0.0001974908,0.00007786704,0.01909609],"genre_scores_gemma":[0.9963295,0.000007291498,0.0001679004,0.00005989152,0.00002744313,0.00001647513,0.00007916155,0.000005890895,0.003306457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1958758,"threshold_uncertainty_score":0.3991526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008804086629035637,"score_gpt":0.2138687836733334,"score_spread":0.2050646970442977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}